FMO03988.5prime Sequence
815 bp (621 high quality bases) assembled on 2008-07-21
> FMO03988.5prime
ACCCTATACGAAGTTATCAGTCCACATGGGGTTTCTAAGCCACCCAATTG
TAAATCTTGTTGGTGACGCGAAATGCAAAATAATGAATGAACTTATTGGT
GAGGGCGCAAGCCTACTTCCTAACTCCTTTGTCCATTACAAGCAACATAC
AAATAATATCCATGATAATTCGCACCTGCAGCTCAACCAGCACTCGGGAA
AACCGCTCTCCTGGGTTCGGTTGCGGGATGAACATATCATTGCGGTGGAT
CACACAACCTTTATCAACGATGCCCGGTTCGCATCGCTGCTCCAGTCGAC
CACCTTGACGACACTTGTATCCGGAGGGGCCCTGTCCACAACTGCGACGC
CCGTCGCTGCCCTGGGCAACTCCTTCGCCCACGCTGTTCCTGGGGGTCAG
GAGAGGGGCAACAGCAGCAGCCTCAGCTGGACGCTGCAAATCAAGTATGT
GAATCTGGAGGACGCCGGCTGGTACTAGTGCCAGCTGGCAACGGAGCCCA
AAATGAACGCCAAGGTGCAGCTGTTTGTGATAACACCCCGAACCGAGCTA
ATCGGCGATCGGCAGCGCTTTGTGAAGGCCGGCAGCAGGGTGGAGCTGCA
CTGCATCGTACGTGGCACCCTGCAGGCCCCCAAGCATATCTTCTGGTATC
GTGGCGACCAACAAGTGACTGCCAAAAACGAGGCCAGCGGCGCCCAGAGC
GGATGGTACACTGCAATCGACCGGAATATCTTCGGCACACCGAGCACATC
GGAACACGATTGGTTCCCTGGTCTTTCCTCTGGTGCGCAAGATCCCTCCG
GCAACTTCACGTGTG
FMO03988.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:40:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dpr16-RC | 2810 | CG12591-RC | 1450..2088 | 180..815 | 2940 | 97.8 | Plus |
| dpr16-RB | 1968 | CG12591-RB | 608..1246 | 180..815 | 2940 | 97.8 | Plus |
| dpr17-RE | 2663 | CG31361-RE | 1647..1867 | 427..647 | 265 | 75.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:40:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5165924..5166431 | 26..533 | 2465 | 99 | Plus |
| 3R | 32079331 | 3R | 5166863..5167089 | 534..758 | 930 | 96 | Plus |
| 3R | 32079331 | 3R | 12110323..12110404 | 566..647 | 215 | 84.1 | Plus |
| 3R | 32079331 | 3R | 5167159..5167217 | 758..815 | 200 | 93.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:40:43 has no hits.
FMO03988.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:53:38 Download gff for
FMO03988.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr16-RA | 1538..2333 | 20..815 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:18:40 Download gff for
FMO03988.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr16-RA | 1538..2333 | 20..815 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:15:33 Download gff for
FMO03988.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr16-RB | 600..1246 | 172..815 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:15:33 Download gff for
FMO03988.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5166863..5167089 | 534..758 | 96 | -> | Plus |
| 3R | 5167160..5167217 | 759..815 | 93 | | Plus |
| 3R | 5165921..5166431 | 20..533 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:53:38 Download gff for
FMO03988.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 991643..992153 | 20..533 | 98 | -> | Plus |
| arm_3R | 992585..992811 | 534..758 | 96 | -> | Plus |
| arm_3R | 992882..992939 | 759..815 | 93 | | Plus |
