FMO03990.5prime Sequence
450 bp (450 high quality bases) assembled on 2008-07-21
> FMO03990.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGAAAGTATTCTT
TGTGTTTGCCGCCCTTGCAGCTCTATCTTTGGCATCTGCCGTGGGGCTAA
CTGATTCCCAAAAGGCTGAGGCAAAGCAGAGAGCCAAGGCCTGCGTCAAA
CAGGAGGGAATCACGAAGGAGCAAGCTATTGCCCTGCGGTCTGGAAACTT
TGCAGACTCCGATCCAAAGGTAAAGTGCTTCGCCAACTGCTTCCTGGAGC
AGACCGGCCTGGTGGCCAATGGGCAGATAAAACCTGACGTGGTTTTGGCC
AAACTAGGTCCCATCGCCGGCGAAGCCAATGTCAAGGAGGTGCAGGCCAA
GTGTGACTCGACCAAGGGAGCCGACAAGTGCGACACTAGCTATCTGCTGT
ACAAGTGCTACTACGAAAACCACGCCCAATTCGCAAGCTTTCTAGACCAT
FMO03990.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:39:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Obp56e-RA | 532 | CG8462-RA | 52..448 | 36..432 | 1985 | 100 | Plus |
| Obp56e-RB | 529 | CG8462-RB | 52..445 | 36..432 | 1930 | 99.2 | Plus |
| Obp56d-RB | 922 | CG11218-RB | 277..554 | 151..428 | 250 | 72.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:39:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19712509..19712848 | 93..432 | 1700 | 100 | Plus |
| 2R | 25286936 | 2R | 19712396..19712454 | 36..94 | 295 | 100 | Plus |
| 2R | 25286936 | 2R | 19703292..19703569 | 428..151 | 250 | 72.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:39:55 has no hits.
FMO03990.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:53:22 Download gff for
FMO03990.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp56e-RA | 44..452 | 27..437 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:18:06 Download gff for
FMO03990.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp56e-RA | 44..452 | 27..437 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:15:06 Download gff for
FMO03990.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp56e-RA | 44..452 | 27..437 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:15:06 Download gff for
FMO03990.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19712510..19712852 | 94..437 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:53:22 Download gff for
FMO03990.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15600015..15600357 | 94..437 | 99 | | Plus |
