FMO03991.5prime Sequence
521 bp (521 high quality bases) assembled on 2008-07-21
> FMO03991.5prime
TCGTATAGCATAATAAAACGAAGTTATCAGTCGACATGGATTTCTGGGGC
ATTTTCATGTTCTTTCTGCTCACCTTCCTCATCATGAGTTGCTGCGGATA
TTGCTGCACCAGCAGACGCCAAGGTGCCGTTCTGTCCACGCCTGTGGTGG
TGACCTCCGCCACCCACACGGCTCCCGGCGGATATCCGGTCACACAGCTG
CCTCCGCCGGGCTATCCATCGAGCAATGCCTACGTAACTGCGACCTCGTA
CCCCGTACAGACCACCGGCAACGTGACTGTGCAGATGCCCATGCCGATGA
GCCACCAGAACCAGCAGCAAATGCCAATGCCTATGCCGATGCCGGGTCAG
CAAACGCATGGCGTGGCGTATCCGACGTATCCTGGCGCCGGGGCTGCCAA
CATGAATCCGCCGCCGTATGACATGTCCATGGCTAATCCAGGACCTAGTG
TTATGCCCGCTGGATATGAGAAGCAAGCTCCCTACAATCCCCACTTTGGC
CAGGCAAGCTTTCTAGACCAT
FMO03991.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17574-RA | 1162 | CG17574-RA | 308..780 | 31..503 | 2350 | 99.8 | Plus |
| CG17574-RJ | 1165 | CG17574-RJ | 308..783 | 31..503 | 2310 | 99.2 | Plus |
| CG17574-RH | 996 | CG17574-RH | 249..614 | 138..503 | 1830 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12849740..12849897 | 503..346 | 790 | 100 | Minus |
| 2R | 25286936 | 2R | 12850099..12850228 | 268..139 | 650 | 100 | Minus |
| 2R | 25286936 | 2R | 12868943..12869050 | 138..31 | 525 | 99.1 | Minus |
| 2R | 25286936 | 2R | 12849961..12850039 | 346..268 | 395 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:24:16 has no hits.
FMO03991.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:39:30 Download gff for
FMO03991.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17574-RA | 305..784 | 26..507 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:28:42 Download gff for
FMO03991.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17574-RA | 305..784 | 26..507 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:59:50 Download gff for
FMO03991.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17574-RA | 305..784 | 26..507 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:59:50 Download gff for
FMO03991.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12849735..12849896 | 347..507 | 98 | <- | Minus |
| 2R | 12849961..12850038 | 269..346 | 100 | <- | Minus |
| 2R | 12850099..12850228 | 139..268 | 100 | <- | Minus |
| 2R | 12868943..12869056 | 18..138 | 94 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:39:30 Download gff for
FMO03991.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8756448..8756561 | 18..138 | 94 | <- | Minus |
| arm_2R | 8737240..8737401 | 347..507 | 98 | <- | Minus |
| arm_2R | 8737466..8737543 | 269..346 | 100 | <- | Minus |
| arm_2R | 8737604..8737733 | 139..268 | 100 | <- | Minus |
