FMO03993.5prime Sequence
1196 bp (1017 high quality bases) assembled on 2008-07-21
> FMO03993.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTCTACCAATC
AGCAGCAGCAGGCGAATCCTTCGGCGGCCGTTGCCGCACCCGCCGCCTCC
TCGGAATACCTGAAACGCACCTGCCTCATCTGCGGCTGCCACACCAACCA
GACGATCAATATCTACGAGCCCCGCTCCGGACCCAATATCGTTCAGCTAA
TCCAGGCGAAATTCAAGTTTCAGCCCCTGAACGAGGACAAATTCCTCTGC
TTTAGCTGCAACAACTGGCTGATCAACTGGCACTCCCTGCAGGCGGTCAA
CAGCAATGAGGCCGAAAGCCAGAGCCAAAGTCCCTCGCACATGGGCAACA
GTGTGCTGCAGCAGGAAAGGACGAAGCTCCGTCCGGTGGCGATGGTTCGA
CCCACGGTGCGAGTGCAGCCCCAATCGCAGCCCCAACTGCAGCCCCAAGT
TCCAATTAATCCCACACCCGCACCCATAGTCTATTCGAAGCGAAGAGCCA
GCAGACGCAGTGCCTCCGTCAGCCGGATGAGCCGAGTGCTGCGCCAGTGT
TGTGTGGAGAGTCTGCGGCGGAGTCCCAAGAAGCGCAATCAGCAGTCGGT
GTTCGTCTGTCTTAGGCCGCAGGGCCAGAAGAGGAGCAATGCGATCTGCA
AGGTGGAGTGTGTGGCGCCGCGCCGGAAACCAGTGGAGCGACTGGTTAAG
GATGTGGCAGCTACAGCTACACCCACACCAGTGCTCAATACACAATCCAC
GCCCACTTACCAAAGATTCCCGCAGCCCAGTGTGGATGGCAAAGTAGTGG
CCATGTTCCGTCGACTGGGAACCACACTCAGTCGGGAAGAACCCGCCGCA
TATTCAGCAGAATCAAACCCCGCCTGCTCGAAACTCCCGCAGATCATGAG
TCCGCTCAAAGAGGCGCCGCCCCTGGACTGCGGGACCTCGATGATGATGA
GATACTGCTGGAATTCGATACCGCCATATCCGAAGTCCTGCCAACTGACC
GCTATCAGTACCCACGAAGAGAACAGGGAAACCTGCAGCCCTAGAAATGA
ACTGGACTGAGTAGAGTAGAATTGATGCCCAACGAACTGAAATGTGCAGA
AGCGAACCCCCTTGATCGCCTAACCTCCCCAACAGAACGCCACAATCCAC
AGCTCATCAACTCGTTCCTGGGATATACAAGTGGGGCTTTTGATCT
FMO03993.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| phyl-RA | 1839 | CG10108-RA | 245..1258 | 38..1049 | 4835 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14427937..14428750 | 1031..218 | 3855 | 99 | Minus |
| 2R | 25286936 | 2R | 14431908..14432093 | 223..38 | 930 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:30:56 has no hits.
FMO03993.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:28:23 Download gff for
FMO03993.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phyl-RA | 241..1238 | 30..1031 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:20:29 Download gff for
FMO03993.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phyl-RA | 239..1236 | 30..1031 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:19:50 Download gff for
FMO03993.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phyl-RA | 241..1238 | 30..1031 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:19:50 Download gff for
FMO03993.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14427962..14428744 | 224..1008 | 99 | <- | Minus |
| 2R | 14431908..14432097 | 30..223 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:28:23 Download gff for
FMO03993.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10315467..10316249 | 224..1008 | 99 | <- | Minus |
| arm_2R | 10319413..10319602 | 30..223 | 97 | | Minus |
