FMO03995.5prime Sequence
1223 bp (1012 high quality bases) assembled on 2008-07-21
> FMO03995.5prime
TATAGCATACCTTATACGAAGTTATCAGTCGACATGGAGCCTTATGATGT
CGTCGTCAACCAGCCCGTCGTCATAGATAACGGCTCCGGTGTGATCAAAG
CCGGCTTTGCTGGTGAGCACATTCCAAAATGCAGGTTTCCCAATTACATT
GGCCGGCCCAAGCATGTCCGAGTGATGGCTGGTGCGCTGGAGGGCGACAT
ATTCGTTGGACCCAAGGCGGAGGAGCACCGTGGCCTGCTTAGCATCCGGT
ACCCCATGGAGCACGGCATTGTCACCGACTGGAATGACATGGAGCGGATA
TGGAGCTACATTTACAGCAAAGAACAACTGGCCACCTTCACGGAGGATCA
TCCCGTGCTGCTGACCGAGGCCCCGCTTAATCCGCGCCGAAACCGCGAAA
AGGCAGCCGAGTTCTTCTTTGAAGGCATCAATGCACCTGCGCTCTTTGTG
TCCATGCAGGCGGTGCTCAGTCTCTACGCCACCGGTCGTGTGACTGGCGT
AGTGCTCGACTCCGGCGACGGTGTGACGCATGCGGTTCCTATCTACGAGG
GATTCGCCATGCCTCACAGTATTATGCGCGTGGACATCGCCGGGCGCGAT
GTGACGCGCTACCTGAAGACACTCATCCGCCGGGAGGGCTTTAACTTCCG
GTCGACTGCCGAATTTGAGATTGTGCGCTCCATCAAGGAGAAGGTCTGCT
ATCTGGCCACCAATCCGCAGAAGGAGGAGACCGTGGAAACCGAGAAGTTT
GCCTACAAGCTGCCCGACGGCAAGATCTTTGAGATTGGACCTGCACGCTT
CAGGGCGCCGGAGGTGCTCTTCCGGCCCGATCTGCTGGGCGAGGAATGTG
AGGGCATTCACGACGTTCTGATGTACTCCATCGAAGAAGTCAGATATGGA
TCTCAGGAAAATGCTCTACAGAACATCGTGCTGTCCGGCGGATCAACGCT
CTTCAAAGGATTCGGCGACCGTCTGTGTCGAACTGAAGAAACACCTCGGC
TAGGATCTCAAGAACAGGATCGCTGCGCCGCAGGAACGTTCTTGTACTCC
ACATTGGAATGGGGCGGATCGATTTTAGGCTCGCCTCGAATACTTTCCAG
AAGATGTGATCTCGACCGGGAAATACGAAGAGGAAGGAACGTAAGCCTGT
CCAGTAAGACTTTTGCAGCTTCTGACATTCGTGGCGCGCGTCCAGTGAGT
GGTCCTAATAATCGTATACTAAT
FMO03995.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arp1-RA | 1469 | CG6174-RA | 80..1207 | 34..1164 | 5085 | 97.5 | Plus |
| CG31347-RA | 865 | CG31347-RA | 728..776 | 82..34 | 245 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12693215..12693761 | 474..1018 | 2440 | 97.6 | Plus |
| 3R | 32079331 | 3R | 12692770..12692945 | 147..322 | 880 | 100 | Plus |
| 3R | 32079331 | 3R | 12693004..12693155 | 322..473 | 760 | 100 | Plus |
| 3R | 32079331 | 3R | 12692643..12692707 | 82..146 | 325 | 100 | Plus |
| 3R | 32079331 | 3R | 12691822..12691870 | 34..82 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:24:54 has no hits.
FMO03995.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:40:02 Download gff for
FMO03995.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arp1-RA | 74..1176 | 26..1134 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:33:12 Download gff for
FMO03995.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arp87C-RA | 81..1183 | 26..1134 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:00:16 Download gff for
FMO03995.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arp1-RA | 74..1176 | 26..1134 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:00:16 Download gff for
FMO03995.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12691816..12691869 | 26..81 | 92 | -> | Plus |
| 3R | 12692643..12692707 | 82..146 | 100 | -> | Plus |
| 3R | 12692770..12692944 | 147..321 | 100 | -> | Plus |
| 3R | 12693004..12693155 | 322..473 | 100 | -> | Plus |
| 3R | 12693215..12693761 | 474..1018 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:40:02 Download gff for
FMO03995.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8517538..8517591 | 26..81 | 92 | -> | Plus |
| arm_3R | 8518365..8518429 | 82..146 | 100 | -> | Plus |
| arm_3R | 8518492..8518666 | 147..321 | 100 | -> | Plus |
| arm_3R | 8518726..8518877 | 322..473 | 100 | -> | Plus |
| arm_3R | 8518937..8519483 | 474..1018 | 98 | -> | Plus |
