FMO03996.5prime Sequence
823 bp (518 high quality bases) assembled on 2008-07-21
> FMO03996.5prime
TATAGCATACATTATACGAAGTTATCAATCGACATGCCTGCTCCGGTCGT
CAAGAAGCCAGCAGCGAAAAAGCTGCCCGCCGTGCCGGAATCGAAGCTGA
AGTTCAGCATGAAACAAATCTCCAAGCGAGTCGCCGAGTCGAAACGTCGC
CTGAAGAAGGCCGCCGTGATTGCCCTGCGCAAGAAGGAGAACCTGGTCCG
CGCCGAGAAGTACCATAATGAGTACATCAAGGCGGAACAGCGCGAGATCA
AGCTGCGTCGCTTGGCCAAGAAGCGCAACCAGTTCTACGTGCCCGCCGAG
GCCAAATTGGCCTTTGTCGTCCGTATCCGCGGTATCAACAAGGTGGCTCC
CAAGGTCCGCAAGGTTCTGCAGCTGTTCCGTCTGAGGCAGATCAACAACG
GTGTGTTCATCAAGCTGAACAAGGCCACCATCAACATGCTGCGCATCGCC
GAGCCCTACATCCCCTGGGGCTATCCCAATCTGAAGTCCGTGCGGGAGCT
GATCTACAAGCGTGGATTCGTGAAGCATAACCGCCAGCGCGTGCCCATCA
CCGAATAACTTCGTGATCGAGCGGAAGCTGCGTCAGGCGCACCAAATTCA
GTGCGACGAGGATCTTGTCCATGAGATCTTCACCGTGGGGCCCAACTTCA
GTACGCCTCCAACTTCCTGTGGCCCTTCAAGCTAAACACCCCCCACCGGC
GGCTGGCGCAAGATGGCCAACCATTATGTCAACGGTGGTGACTTTCGGCA
ACCGCGAGGACCAGATCACCGTCTGCTGCGCAAGATGGTCGCAAGCTTTC
TAGACCATTCGTTTGGCGCCGGA
FMO03996.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:28:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL7-RB | 1167 | CG4897-RB | 146..901 | 34..790 | 3595 | 98.7 | Plus |
| RpL7-RA | 895 | CG4897-RA | 50..805 | 34..790 | 3595 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:28:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10201598..10202055 | 332..790 | 2010 | 98.3 | Plus |
| 2L | 23513712 | 2L | 10201230..10201528 | 34..332 | 1465 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:28:41 has no hits.
FMO03996.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:17 Download gff for
FMO03996.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL7-RA | 45..809 | 27..795 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:31:02 Download gff for
FMO03996.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL7-RA | 44..808 | 27..795 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:15:40 Download gff for
FMO03996.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL7-RA | 45..809 | 27..795 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:15:40 Download gff for
FMO03996.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10201230..10201528 | 34..332 | 99 | -> | Plus |
| 2L | 10201599..10202059 | 333..795 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:17 Download gff for
FMO03996.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10201230..10201528 | 34..332 | 99 | -> | Plus |
| arm_2L | 10201599..10202059 | 333..795 | 97 | | Plus |
