FMO04001.5prime Sequence
782 bp (782 high quality bases) assembled on 2008-08-11
> FMO04001.5prime
CGTATAGCATACCTTATACGAAGTTATCAGTCGACATGAGTAACGGCAGG
CATTTGGCAAAAGGCTCACCCATGCCGGATGTTCCCGAAGATGGTATCCT
TCGCCTGTACTCGATGCGCTTCTGCCCATTTGCCCAACGGGTGCATCTGG
TCCTGGACGCCAAGCAGATCCCGTATCACAGCATCTACATTAATCTCACA
GACAAGCCGGAGTGGCTGCTGGAGAAGAATCCACAGGGCAAGGTGCCGGC
TCTAGAAATCGTGCGAGAACCTGGACCACCTGTGCTCACAGAGTCGCTAC
TGATTTGTGAATATCTGGACGAGCAGTATCCATTGCGACCACTCTATCCA
CGTGATCCGCTGAAGAAAGTGCAGGACAAGTTACTAATCGAGCGATTTAG
AGCGGTGTTAGGTGCCTTCTTCAAGGCATCCGATGGCGGTGATCTGGAGC
CCTTCTGGAGCGGCCTGGACATCTACGAAAGGGAGCTGGCTCGACGTGGT
ACGGAATTCTTTGGTGGCGAGCAGACGGGCATTCTGGACTATATGATTTG
GCCCTGGTGTGAGCGCCTCGAGCTCCTTAAGTTGCAGCGTGGAGAGGATT
ATAACTACGATCAGAGTCGCTTCCCCCAGCTGACCCTTTGGCTGGAACGC
ATGAAACGAGATCCGGCTGTGATGGCCTTCTACATGGAGGCCGAGGTTCA
GGCGGAGTTCCTGCGTACACGGAGCCTGGGTCGACCCAATTACAATCTGC
TGGTCAAGGATGCCGCAAGCTTTCTAGACCAT
FMO04001.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:58:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| se-RA | 825 | CG6781-RA | 38..767 | 35..764 | 3650 | 100 | Plus |
| GstO3-RA | 881 | CG6776-RA | 85..257 | 51..223 | 280 | 78.2 | Plus |
| GstO1-RA | 954 | CG6662-RA | 134..244 | 105..215 | 195 | 80.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:58:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8520672..8521242 | 62..632 | 2855 | 100 | Plus |
| 3L | 28110227 | 3L | 8521299..8521431 | 632..764 | 665 | 100 | Plus |
| 3L | 28110227 | 3L | 8519538..8519671 | 90..223 | 250 | 79.1 | Plus |
| 3L | 28110227 | 3L | 8524566..8524676 | 215..105 | 195 | 78.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:58:17 has no hits.
FMO04001.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:04 Download gff for
FMO04001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| se-RA | 33..773 | 28..770 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:15:37 Download gff for
FMO04001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| se-RA | 33..773 | 28..770 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:35:21 Download gff for
FMO04001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| se-RA | 33..773 | 28..770 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:35:21 Download gff for
FMO04001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8520674..8521242 | 64..632 | 100 | -> | Plus |
| 3L | 8521300..8521437 | 633..770 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:04 Download gff for
FMO04001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8513774..8514342 | 64..632 | 100 | -> | Plus |
| arm_3L | 8514400..8514537 | 633..770 | 97 | | Plus |
