FMO04002.5prime Sequence
918 bp (918 high quality bases) assembled on 2008-08-11
> FMO04002.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGACAACCTCCGC
TGACAGTGTGTTCGTTGCCCGATCCGATGGCATCTCCGCCGAAGGAGTCC
GGGATCAGTACGCCGATGGCAAGGCCGCCAAGGTGTGGGAAATCTTCATC
GGTGACAAAAACTCGCGTACGGACAACTACAAGAACTTCCTGATCGATAT
GCTGCGCAATAAGGGATGCAAGCGTGTCCTAGACGTGGCCTGTGGAACGG
GTGTGGACTCCCTGATGCTTGTGGAGGAGGGCTTCGAAGTTGTGTCCGTA
GATGCCTCTGATAAGATGTTGAAGTACGCCCTCAAGGAGCGCTGGGCCCG
GCGAAATGAAGCTGCCTTCGATAAGTGGGTCATTGAGGAAGCCAACTGGT
TGACACTGTACGACGACATTCAGGAGCACATTCAGGATGGTTTCGATGCC
GTCATTTGCTTGGGCAACTCCTTTGCCCACTTGATGGACGGGTTCGGGGA
TCAGCGGGAGCACAAGCAGGCTATTGGCAACTTCGAAAAGTGCCTCAAGC
CTGGAGGCGTCCTGCTTATCGATCATCGCAACTACGACAATATCCTGGAA
ACGGGAGCTACGCCTGCCAAGAGCATCTACTATAATACGAGTCACACGGC
GGACATCAAGACATCCGTGCTCTTCTACTGCGGTAAGCCCGCCCTGGTGT
CGATGGACTACCTGATCGCTGGCAACAAGTTGACCAGTGAGTTCCGTCTG
TCCTACTATCCCCACGGGCTGAAACGATTCCAGGAGATTCTAGCCGAGAT
CTTCTCCGCCAAAGCAAGCACCAGTTGTATGGTGACTTAAGGAGATGAGC
CAAGTGAAGAACCCCGCCTTCTACATTCACCTGATCGAAAAGCCACAGGT
TGCAAGCTTTCTAGACAT
FMO04002.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:33:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gnmt-RA | 990 | CG6188-RA | 42..908 | 37..901 | 4270 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:33:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12675186..12675443 | 379..636 | 1290 | 100 | Plus |
| 3R | 32079331 | 3R | 12675736..12676002 | 637..901 | 1220 | 98.9 | Plus |
| 3R | 32079331 | 3R | 12674649..12674863 | 37..251 | 1075 | 100 | Plus |
| 3R | 32079331 | 3R | 12674998..12675126 | 251..379 | 645 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:33:28 has no hits.
FMO04002.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:41:51 Download gff for
FMO04002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6188-RA | 34..915 | 29..910 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:17:16 Download gff for
FMO04002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6188-RA | 33..914 | 29..910 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:27 Download gff for
FMO04002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gnmt-RA | 34..915 | 29..910 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:27 Download gff for
FMO04002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12674641..12674863 | 29..251 | 98 | -> | Plus |
| 3R | 12674999..12675126 | 252..379 | 100 | -> | Plus |
| 3R | 12675187..12675443 | 380..636 | 100 | -> | Plus |
| 3R | 12675736..12676009 | 637..910 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:41:51 Download gff for
FMO04002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8500363..8500585 | 29..251 | 98 | -> | Plus |
| arm_3R | 8500721..8500848 | 252..379 | 100 | -> | Plus |
| arm_3R | 8500909..8501165 | 380..636 | 100 | -> | Plus |
| arm_3R | 8501458..8501731 | 637..910 | 97 | | Plus |
