FMO04003.5prime Sequence
1212 bp (1022 high quality bases) assembled on 2008-08-11
> FMO04003.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGACGGAAACAA
GGACGAGGCCCAGCGGTGCATCGACTTCGCGGTCCAAGCGCTCGCCGCGG
GCAAAATCGAAAAGGCCGAGAAGTTCCTTCTCAAGGCGGAGAGGCTCTTT
CCTACGGATAATGCCAAAAAGCTACTTGCCCAGTTGAAGAGCACTCCGAG
CAACGAAAGCAATGGCAAATCCCGTACAGCGGGTGCCAGCGATGAGAAGG
ACAGCGGGCCGAGGAAACGTGTGAACTCGGATTCCCGTTCCAGTGCCCCA
GATTACACCAAAGATCAGTTGGAAGCTGTGCGAAAGGTCAAAACATGTAA
GGACTACTACGAAGTACTGGGCGTTAGCAAGACGGCCACTGATTCGGAGA
TCAAAAAGGCCTACAAGAAGCTAGCTCTGCAATTGCATCCCGACAAGAAT
AAGGCTCCTGGTGCGGTGGAGGCTTTCAAGGCTCTCGGCAATGCTGCTGG
CGTACTTACGGATGCCGAAAAGCGCAAGAACTACGATCTGTATGGCATCA
ATGAGTCGCACAATGGTCACGGCAACAATGGTGGCGGACACCATGGACAC
GGGCAATACTACAACAACGAGTATGGATATTCGCGTGGATTCCAGGCTGA
CATCAGTGCCGAGGAGCTGTTCAACATGTTCTTCAACGGCGGATTCCCAC
AGCAGAATGTCCATATGCGGCAGCAGCGACGTCGTCAGCAGGCTCGCGAG
GATCGAGAAGGTAACAACTCTTCGGCCTTGGTAAACTTGCTGCCCATCGT
GCTGCTCATTGGGACTCTCCATGATGTCGTCCTTCTTCATCTCGGACCCA
ATGTACAGCTTGACGCCCTCTCATAATATTCGGTGAAGCGTGAGACGAAC
CTCCCTGAAGGTACCATACTACGTAAAGGACACTTCTATTCAGATATTCA
GGGATCAGTGGCCCGATTAGAGGAATCCGTGGAAGAGGACTTTTGTGATT
CATCTAAACACTCCTGCAGTCGAGAGAGGAATTATCGCGACTCATTGCTG
GCCCAGGCCGTACCTTTGGCGATCGGGATTTTGTACAGAAAGGCGCAGAC
TTCATACGCCCATCGTGCCGAAATCTGCAAAGTATTTATCAAGCAGCCTT
TCTTAGACCATCTGCGCGGCAGTATGTCTACTTAATCAATCGATACTTAT
TCACCACTAGAC
FMO04003.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:36:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3061-RA | 1981 | CG3061-RA | 319..1423 | 36..1138 | 5085 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:36:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14033506..14033921 | 345..760 | 2080 | 100 | Plus |
| 3R | 32079331 | 3R | 14033267..14033441 | 170..344 | 875 | 100 | Plus |
| 3R | 32079331 | 3R | 14032689..14032822 | 36..169 | 670 | 100 | Plus |
| 3R | 32079331 | 3R | 14034164..14034326 | 875..1037 | 565 | 95.2 | Plus |
| 3R | 32079331 | 3R | 14033987..14034099 | 760..873 | 520 | 99.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:36:51 has no hits.
FMO04003.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:52 Download gff for
FMO04003.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3061-RA | 313..1404 | 30..1121 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:17:17 Download gff for
FMO04003.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3061-RA | 317..1408 | 30..1121 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:10 Download gff for
FMO04003.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3061-RA | 313..1404 | 30..1121 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:10 Download gff for
FMO04003.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14033987..14034099 | 760..873 | 99 | -> | Plus |
| 3R | 14034162..14034325 | 874..1036 | 95 | -> | Plus |
| 3R | 14034380..14034442 | 1037..1099 | 92 | == | Plus |
| 3R | 14033506..14033920 | 345..759 | 100 | -> | Plus |
| 3R | 14032683..14032822 | 30..169 | 98 | -> | Plus |
| 3R | 14033267..14033441 | 170..344 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:52 Download gff for
FMO04003.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9859709..9859821 | 760..873 | 99 | -> | Plus |
| arm_3R | 9859884..9860047 | 874..1036 | 95 | -> | Plus |
| arm_3R | 9860102..9860164 | 1037..1099 | 92 | == | Plus |
| arm_3R | 9858405..9858544 | 30..169 | 98 | -> | Plus |
| arm_3R | 9858989..9859163 | 170..344 | 100 | -> | Plus |
| arm_3R | 9859228..9859642 | 345..759 | 100 | -> | Plus |
