FMO04004.5prime Sequence
823 bp (823 high quality bases) assembled on 2008-08-11
> FMO04004.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGAAATCGTTTGGAT
TGATTGCACTGGCTATCTGTGGCGTTATCTGCGTCGCTGCGGAACCACAA
CACACCTACGACGGTCGCAATGGGCCGCATGTCTTCGGTTCACCGGGCAA
TCAGGTCTATATAAGGGGCCAGAATGAAGGCACCTACAGCGTGCCGGGAG
TGGGTGGCCAGTTCCAAAACGCTCCTCAACGGGGTGAGCATGTGTACACC
GATGAGGCGGGCAACACGTTTGTTAACCGAAAGAACGCTGGTGGACCAGC
TTCCCACACCATCAGTGGTCCCAATTTTTCCGCCAAAAATTTAGGGCCCA
ATGGAGCTAAGAGCGTGGGAATCCCACAACGTGCCCGGCGCAGTCCGCAG
TTTCACGTAGAGCGTCCCGGTCGCACTGTTGACGTTGGAAACGGAGGATT
CTACATTCAGCGTGGCCGACGCAGTCCACAGCTTCATGTGGCACGCCCAG
ATCGCACCGTAACCATTGGTAATGGCGGCGTCTATATTCAACGCAGTCGA
CGCAGTCCACAGTTCCATGTGGAGCGACCAGATCGCACTGTTGATTTCGG
TAACGGTGGCTTCTCCGCTCAACGTTTCCGCCGTGGGATCAACGATGCCC
GCGTCCAGGGTGAGAACTTTGTGGCCCGCGACGATCAGGCAGGAATTTGG
GACAATAATGTCTCCGTTTGGAAGCGTCCGGACGGACGCACTGTCACAAT
CGATAGGAATGGTCATACCATCGTGTCCGGAAGGGGACGTCCCGCTCAGC
ACTACGCAAGCTTTCTAGACCAT
FMO04004.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:07:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33470-RC | 904 | CG33470-RC | 32..802 | 35..805 | 3855 | 100 | Plus |
| CG33470-RA | 1159 | CG33470-RA | 32..802 | 35..805 | 3855 | 100 | Plus |
| IM10-RC | 1160 | CG18279-RC | 33..803 | 35..805 | 3855 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:07:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13407437..13407942 | 297..802 | 2530 | 100 | Plus |
| 2R | 25286936 | 2R | 13412164..13412669 | 297..802 | 2530 | 100 | Plus |
| 2R | 25286936 | 2R | 13407167..13407380 | 86..299 | 1070 | 100 | Plus |
| 2R | 25286936 | 2R | 13411894..13412107 | 86..299 | 1070 | 100 | Plus |
| 2R | 25286936 | 2R | 8934132..8934239 | 638..745 | 300 | 85.2 | Plus |
| 2R | 25286936 | 2R | 13407043..13407094 | 35..86 | 260 | 100 | Plus |
| 2R | 25286936 | 2R | 13411770..13411821 | 35..86 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:07:30 has no hits.
FMO04004.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:03:18 Download gff for
FMO04004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33470-RC | 23..814 | 27..815 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:16:42 Download gff for
FMO04004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33470-RA | 29..820 | 27..815 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:38:55 Download gff for
FMO04004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| IM10-RC | 24..815 | 27..815 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:38:55 Download gff for
FMO04004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13407034..13407094 | 27..86 | 95 | -> | Plus |
| 2R | 13407168..13407380 | 87..299 | 100 | -> | Plus |
| 2R | 13407440..13407953 | 300..812 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:03:18 Download gff for
FMO04004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9294539..9294599 | 27..86 | 95 | -> | Plus |
| arm_2R | 9294673..9294885 | 87..299 | 100 | -> | Plus |
| arm_2R | 9294945..9295458 | 300..812 | 99 | | Plus |
