FMO04005.5prime Sequence
495 bp (495 high quality bases) assembled on 2008-08-11
> FMO04005.5prime
TATAGCATACATTATACGAAGTTATCAGTCGACATGCAGCAGAAGCGCAG
AGAACCCGTGCAGGCTGTCCAGGTCTTCGGACGCAAGAAAACCGCCACCG
CCGTCGCTTACTGCAAGCGTGGCAACGGCCTCCTGAAGGTGAACGGTCGT
CCTCTGGAGCAGATTGAACCCAAGGTCCTGCAATACAAACTGCAGGAGCC
CCTTCTGTTGCTCGGCAAGGAGAAATTCGCCGGCGTCGACATCCGCGTGC
GCGTTAGCGGTGGTGGTCATGTAGCCCAGATCTACGCCATCCGCCAGGCC
ATTTCCAAGGCTCTCGTTGCCTTCTACCAGAAATACGTCGATGAGGCCTC
CAAGAAGGAGATCAAGGACATTCTGGTGCAGTACGACAGAACCCTGCTGG
TCGGCGATCCGCGTCGCTGCGAGCCCAAGAAGTTCGGCGGTCCAGGTGCC
CGTGCTCGCTACCAGAAGTCGTACCGTGCAAGCTTTCTAGACCAT
FMO04005.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:58:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS16-RB | 754 | CG4046-RB | 213..656 | 34..477 | 2220 | 100 | Plus |
| RpS16-RA | 573 | CG4046-RA | 32..475 | 34..477 | 2220 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:58:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22607755..22607897 | 335..477 | 715 | 100 | Plus |
| 2R | 25286936 | 2R | 22606507..22606641 | 86..220 | 675 | 100 | Plus |
| 2R | 25286936 | 2R | 22606932..22607048 | 218..334 | 585 | 100 | Plus |
| 2R | 25286936 | 2R | 22606245..22606288 | 44..87 | 220 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:58:07 has no hits.
FMO04005.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:10:58 Download gff for
FMO04005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS16-RA | 26..484 | 27..488 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:16:22 Download gff for
FMO04005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS16-RA | 32..490 | 27..488 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:45:48 Download gff for
FMO04005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS16-RA | 26..484 | 27..488 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:45:48 Download gff for
FMO04005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22607755..22607906 | 335..488 | 96 | | Plus |
| 2R | 22606245..22606288 | 44..87 | 100 | -> | Plus |
| 2R | 22606509..22606640 | 88..219 | 100 | -> | Plus |
| 2R | 22606934..22607048 | 220..334 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:10:58 Download gff for
FMO04005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18493750..18493793 | 44..87 | 100 | -> | Plus |
| arm_2R | 18494014..18494145 | 88..219 | 100 | -> | Plus |
| arm_2R | 18494439..18494553 | 220..334 | 100 | -> | Plus |
| arm_2R | 18495260..18495411 | 335..488 | 96 | | Plus |
