FMO04006.5prime Sequence
461 bp (461 high quality bases) assembled on 2008-08-11
> FMO04006.5prime
CTTCGTATAGCATACCTTATACGAAGTTATCAGTCGACATGCCCGAATAT
GTGCCGGCACGGGGCTTCAAGGAGATGGAAAATCTGATCAAGCTGTACGA
GAACCAGCGCAGCCCCATCTACATCTACTTCTACGGCGAGAAAGACAAGG
ACGGACGCAGCTGGTGTCCGGACTGCGTGGCGGCCGAGGAAACTATCATG
AGTGCCTTTCGCAACCACGCGCCGGCGGATTGCATGATCCTGGTGGTGGA
CGTGGGTAGCCGGGAATCCTGGATAGGCAAGGACAACATGTTCCGAAAGC
CGCCATACTCGGTGGAAGGCATACCGACCCTTATACGCTGGAAGGGCGTG
GAGCGCCTGGATGGGGATCAGCTGCTCAAGTCGAGTCTTCTGGAGCTCTT
TTTCGAGGAGACCGATCCGAAGAAGTCCAATTTTGTCGCCCAAGCAAGCT
TTCTAGACCAT
FMO04006.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:25:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3939-RB | 747 | CG3939-RB | 313..717 | 39..443 | 2025 | 100 | Plus |
| CG3939-RA | 931 | CG3939-RA | 497..901 | 39..443 | 2025 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:25:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 3175933..3176193 | 183..443 | 1305 | 100 | Plus |
| X | 23542271 | X | 3175514..3175658 | 39..183 | 725 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:25:49 has no hits.
FMO04006.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:40:48 Download gff for
FMO04006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3939-RA | 497..904 | 39..447 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:17:09 Download gff for
FMO04006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3939-RA | 396..803 | 39..447 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:00:51 Download gff for
FMO04006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3939-RA | 497..904 | 39..447 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:00:51 Download gff for
FMO04006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 3175514..3175658 | 39..183 | 100 | -> | Plus |
| X | 3175934..3176196 | 184..447 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:40:48 Download gff for
FMO04006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 3069547..3069691 | 39..183 | 100 | -> | Plus |
| arm_X | 3069967..3070229 | 184..447 | 99 | | Plus |
