FMO04007.5prime Sequence
518 bp (518 high quality bases) assembled on 2008-08-11
> FMO04007.5prime
CTTCGTATAGCATACCTTATACGAAGTTATCAGTCGACATGAGCGATGAA
TTGACTAATGAGCAAACTGCATTACTACGTAATGCATTTAATGCTTTTGA
CCCTGAAAAAAATGGATATATCAACACAGCTATGGTGGGTACGATACTTA
GCATGTTGGGTCATCAACTTGATGATGCAACTCTTGCTGACATTATCGCT
GAAGTCGATGAGGATGGTTCGGGCCAAATCGAATTTGAAGAATTTACCAC
CCTGGCAGCCCGCTTCCTTGTGGAAGAGGACGCTGAAGCTATGATGGCTG
AATTGAAGGAAGCTTTCCGCCTTTACGACAAAGAAGGAAATGGATATATA
ACTACTGGTGTTCTTCGTGAAATCCTGCGCGAACTAGACGATAAATTGAC
AAATGACGACCTGGACATGATGATTGAGGAAATTGATTCCGATGGATCGG
GTACTGTTGATTTTGATGAATTTATGGAAGTAATGACCGGTGGCGACGAC
GCAAGCTTTCTAGACCAT
FMO04007.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:25:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TpnC41C-RB | 1880 | CG2981-RB | 224..685 | 39..500 | 2295 | 99.8 | Plus |
| TpnC41C-RA | 821 | CG2981-RA | 224..685 | 39..500 | 2295 | 99.8 | Plus |
| TpnC47D-RB | 791 | CG9073-RB | 439..503 | 414..478 | 205 | 87.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:25:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5066528..5066923 | 468..73 | 1980 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:25:27 has no hits.
FMO04007.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:40:30 Download gff for
FMO04007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TpnC41C-RA | 224..688 | 39..504 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:16:23 Download gff for
FMO04007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TpnC41C-RA | 224..688 | 39..504 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:00:38 Download gff for
FMO04007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TpnC41C-RA | 224..688 | 39..504 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:00:38 Download gff for
FMO04007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5066428..5066463 | 469..504 | 94 | <- | Minus |
| 2R | 5066528..5066923 | 73..468 | 100 | <- | Minus |
| 2R | 5066977..5067006 | 42..72 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:40:30 Download gff for
FMO04007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 953933..953968 | 469..504 | 94 | <- | Minus |
| arm_2R | 954033..954428 | 73..468 | 100 | <- | Minus |
| arm_2R | 954482..954511 | 42..72 | 93 | | Minus |
