FMO04008.5prime Sequence
357 bp (357 high quality bases) assembled on 2008-08-11
> FMO04008.5prime
TATAGCATACATTATACGAAGTTATCAGTCGACATGGCTCGCTACACGTA
CCTTGTCGCCCTTGTGCTTCTGGCCATTTGCTGCCAGTGGGGATACTGCG
GCGCCATGGCCATGCCGGATGAGGAGCGCTATGTGCGCAAGGAGTACAAT
CGGGATCTCCTCGACTGGTTCAACAACGTGGGCGTGGGACAGTTCAGTCC
CGGCCAAGTGGCCACTCTCTGTCGCTATCCGCTGATCCTCGAGAACTCCT
TGGGCCCATCCGTGCCCATCAGGAAGCGCAACTCGGAGCTAATCAACTCC
TTGTTGAGTCTGCCCAAGAACATGAACGATGCGGGCAAGGCAAGCTTTCT
AGACCAT
FMO04008.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pdf-RA | 680 | CG6496-RA | 79..384 | 34..339 | 1530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26455758..26456063 | 339..34 | 1530 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:10:30 has no hits.
FMO04008.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:40:30 Download gff for
FMO04008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pdf-RA | 71..388 | 25..344 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:18:08 Download gff for
FMO04008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pdf-RA | 71..388 | 25..344 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:56:31 Download gff for
FMO04008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pdf-RA | 71..388 | 25..344 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:56:31 Download gff for
FMO04008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26455754..26456065 | 33..344 | 98 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:40:30 Download gff for
FMO04008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22281476..22281787 | 33..344 | 98 | -> | Minus |
