FMO04009.5prime Sequence
442 bp (442 high quality bases) assembled on 2008-08-11
> FMO04009.5prime
CATCCATTATACGAAGTTATCAGTCGACATGCAGCTGTTCGTCCGTGGAC
TAGAGACCATCGAGGCCCTGGAGGTTTCCCAGGATGCCACCATTGCCGGA
GTCAAGAACCAACTGGCCCAGATCCATGGATTCAACGCCGAGGAATTCAG
CCTCGATTGCGAGGGCATCACTCTGGCCAACGAGACTCCCGTGACCGCCC
TGAGCTCCTTTGAGCTGGACCTCAACATTCCCATGCTGGGAGGTAAGGTG
CACGGTTCTCTGGCCCGTGCCGGCAAGGTCAAGGGACAGACGCCCAAGGT
GGAGAAGCAGGAGAAGAAGAAGAAGAAGACCGGACGCGCCAAGCGCAGGA
TCCAGTACAACCGCCGGTTCGTCAACTTTGTGCAGGGCTTCGGCCGTCGT
CGCGGCCCCAACGCCAACTCCACAGCAAGCTTTCTAGACCAT
FMO04009.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:29:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS30-RC | 598 | CG15697-RC | 123..519 | 28..424 | 1985 | 100 | Plus |
| RpS30-RB | 507 | CG15697-RB | 32..428 | 28..424 | 1985 | 100 | Plus |
| RpS30-RA | 517 | CG15697-RA | 42..438 | 28..424 | 1985 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:29:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20851029..20851348 | 105..424 | 1600 | 100 | Plus |
| 3R | 32079331 | 3R | 20850865..20850943 | 28..106 | 395 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:29:29 has no hits.
FMO04009.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:28 Download gff for
FMO04009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS30-RA | 43..444 | 19..424 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:17:24 Download gff for
FMO04009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS30-RB | 13..414 | 19..424 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:16:01 Download gff for
FMO04009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS30-RA | 37..438 | 19..424 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:16:01 Download gff for
FMO04009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20851031..20851348 | 107..424 | 100 | | Plus |
| 3R | 20850860..20850943 | 19..106 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:28 Download gff for
FMO04009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16676582..16676665 | 19..106 | 95 | -> | Plus |
| arm_3R | 16676753..16677070 | 107..424 | 100 | | Plus |
