FMO04013.5prime Sequence
396 bp (396 high quality bases) assembled on 2008-08-11
> FMO04013.5prime
GCGGTGGTATCGGTGTTCCTGAACTTCATTCACGCAGCGCCCGGTGTGGA
TATTTCCAACGACGAACTGCTGGATGGAAAATATCTTTGTGAAGCTGGCT
CGAAGAAGTACGATGGACCGTTTATAGTGAGATTGATTTCGGCTGCCAAT
GGACAAACGGTCGTCTGCTACGAGTGCAGCCAGTCGGAGTTCAAGACGAA
GTACTCGGTGAAGCAGTGCGCGGCCGGCAAGATCGGGTCTGGCCATCACC
GGGACCTGGTGCCCTACCTGGTGAGGATGGACCCCCTGTACAAGGACACC
TGGAGCAGTAAGCTCAAGCGGAACTTCGACGAGATCGACAAGGCCTCCGC
CAGCTTCAGCATCCTCAACCAGCTCGTCGCAAGCTTTCTAGACCAT
FMO04013.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:37:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13565-RA | 593 | CG13565-RA | 81..458 | 1..378 | 1890 | 100 | Plus |
| CG13565-RC | 611 | CG13565-RC | 81..174 | 1..94 | 470 | 100 | Plus |
| CG13565-RB | 1071 | CG13565-RB | 541..634 | 1..94 | 470 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:36:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23947094..23947342 | 378..130 | 1245 | 100 | Minus |
| 2R | 25286936 | 2R | 23948488..23948536 | 49..1 | 245 | 100 | Minus |
| 2R | 25286936 | 2R | 23948352..23948398 | 94..48 | 235 | 100 | Minus |
| 2R | 25286936 | 2R | 23947616..23947655 | 131..92 | 200 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:37:00 has no hits.
FMO04013.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:55 Download gff for
FMO04013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13565-RA | 81..458 | 1..378 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:17:10 Download gff for
FMO04013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13565-RA | 79..456 | 1..378 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:20:06 Download gff for
FMO04013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13565-RA | 81..458 | 1..378 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:20:06 Download gff for
FMO04013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23947094..23947340 | 132..378 | 100 | <- | Minus |
| 2R | 23947616..23947652 | 95..131 | 100 | <- | Minus |
| 2R | 23948352..23948397 | 49..94 | 100 | <- | Minus |
| 2R | 23948489..23948536 | 1..48 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:55 Download gff for
FMO04013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19834617..19834863 | 132..378 | 100 | <- | Minus |
| arm_2R | 19835139..19835175 | 95..131 | 100 | <- | Minus |
| arm_2R | 19835875..19835920 | 49..94 | 100 | <- | Minus |
| arm_2R | 19836012..19836059 | 1..48 | 100 | | Minus |
