FMO04016.5prime Sequence
413 bp (413 high quality bases) assembled on 2008-08-11
> FMO04016.5prime
CTTATACGAAGTTATCAGTCGACATGGCCAAGATCATTAAGGCGTCCACA
GGTTTGACTGGACTCGCCGTGTCCACCAATCCACACCACACGCTGAGTGC
TCTGTATGGCAAGATTCTGCGGGCGGTGTCCAAGATGCCACAGGACGCCA
GCTACCGCAAGTACACGGAGCAACTGGTCAAGCAGCGCGCCGATTCTGTG
GCCCAACACAAGGACATCACTGCCCTGGAAAAGGCCGTCGGTTGCGGTCA
AGTGGAGGAGCTAATTGTCCAGGCCGAGAACGAGCTGATCCTTGCGCGCA
AAATGCTCGGCTGGAAGCCCTGGGAGAAGTTGGTCCAAGCCGCGCCTGCC
AAGCAGTGGGACTGGCCACCAGCCCAGATCATGGAGCCCAAGGTTGCAAG
CTTTCTAGACCAT
FMO04016.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:36:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6463-RA | 597 | CG6463-RA | 90..463 | 22..395 | 1870 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:36:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 10693318..10693506 | 395..207 | 945 | 100 | Minus |
| 3L | 28110227 | 3L | 10693706..10693868 | 206..44 | 815 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:36:42 has no hits.
FMO04016.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:49 Download gff for
FMO04016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6463-RA | 90..469 | 22..403 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:17:07 Download gff for
FMO04016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6463-RA | 88..467 | 22..403 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:19:55 Download gff for
FMO04016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6463-RA | 90..469 | 22..403 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:19:55 Download gff for
FMO04016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 10693312..10693506 | 207..403 | 97 | <- | Minus |
| 3L | 10693706..10693867 | 45..206 | 100 | <- | Minus |
| 3L | 10693997..10694019 | 22..44 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:49 Download gff for
FMO04016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 10686412..10686606 | 207..403 | 97 | <- | Minus |
| arm_3L | 10686806..10686967 | 45..206 | 100 | <- | Minus |
| arm_3L | 10687097..10687119 | 22..44 | 100 | | Minus |
