FMO04017.5prime Sequence
1165 bp (1014 high quality bases) assembled on 2008-08-11
> FMO04017.5prime
AGCATACCTTATACGAAGTTATCAGTCGACATGTTGGCCGTACGAAGTTC
CCAGAGATTGGGCCTACGTTCCCTGCTACCGTCTGCCTTCAAAAACGTGG
GATTGGTCAACTACTCCTCTTCGCAGTCCAAAAACGACGATGGATACTCC
TCTTCGGACGACGAAAAGCCCACGAAGAAGAAGGAGGAACCTGTGGAAAC
GGCGGCCCAGCGGCTGAACCGCCTGTTGGGCACCATGCAGGCCACGGATC
AGCTCTCGGCATCGGACTTTCCACGTCCTGGTGATGCCAACAGGAAGCGG
AGGGAGGCCCAGAAACAGGAGGCAGCCGCCAAGAATGTTCTAACTGCGGC
CAAGAACATTGCTAGCATGCTGGGCACCAGTGAGAGCGACAAGAAGCAGA
CAGAGTCTGAGCTATTGGCCAAACTCCTTGGCCATGGAAGCGAGTCCTCT
TCAGCAGCGACCGGAGAAAATCAGACGGCGGATGTTTCGGGATCTCCTTC
TGGTGATAAGGAACTCAATCTGAGTGATATTATCGTGGGCATGAAGATCG
ATCGTCGTCAGCAGCCGCAGCAGGTGGAGCAGACCCGCGGCGAGTACGTT
CGCCGCTCGCTGGCTTCCAGATTCAAGCCACAGAATCGAGATGGGGCTTA
TCAGCGGTCACAGAGGCAAACCAAACGAGAGGCTGAATCCTTTACGGGCA
GTGTCAATTTGTACGGCGGGGAACCGTTGGGTATCTTCAAGGATACCCAG
CTGCCGATTTCCAACGACATCCTTTCAACCTGGTCACAGCTGAGTGAGCG
GGAGCTTAGTTTACAAGCTTCCCATCCCCCGGCAAACTACTTCGAGCAAA
TGGTCCTGTGGACGGATCAAAAGAACGTGTGGCGCTTTCCCATCAACAAT
GAGCAAGATTGGGAGGACGAGCATAACGTGGACTTCTCGGAACACATTTT
TCTGGAACAACATCTCGAGGATTGGTGTCCTAGCAAGGGGCCTATTCGCA
ATTTCATGGAAGCTCGTCTGCGTCGGCTGTTCAAGATCCCTACTGACTGC
CAAGAGAGAGATCCCATTTTTCTGGTTCGGTGACTATTTCAGGCAGAGAC
ATTCTGAAGGATTCTGATAGCTAGAGCCAGCAAGTAATTCTGCTGCAGCT
TCCAAGAACATTCCG
FMO04017.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:25:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpS31-RA | 1277 | CG5904-RA | 98..1225 | 31..1144 | 5045 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:25:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16005912..16006416 | 523..1028 | 2435 | 99.2 | Plus |
| 3L | 28110227 | 3L | 16005391..16005847 | 68..524 | 2285 | 100 | Plus |
| 3L | 28110227 | 3L | 16005290..16005327 | 31..68 | 190 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:25:32 has no hits.
FMO04017.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:40:34 Download gff for
FMO04017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS31-RA | 98..1184 | 31..1107 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:15:45 Download gff for
FMO04017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS31-RA | 94..1180 | 31..1107 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:00:41 Download gff for
FMO04017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS31-RA | 98..1184 | 31..1107 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:00:41 Download gff for
FMO04017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16005290..16005327 | 31..68 | 100 | -> | Plus |
| 3L | 16005392..16005847 | 69..524 | 100 | -> | Plus |
| 3L | 16005914..16006484 | 525..1090 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:40:34 Download gff for
FMO04017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15998390..15998427 | 31..68 | 100 | -> | Plus |
| arm_3L | 15998492..15998947 | 69..524 | 100 | -> | Plus |
| arm_3L | 15999014..15999584 | 525..1090 | 97 | == | Plus |
