FMO04018.5prime Sequence
1195 bp (995 high quality bases) assembled on 2008-08-11
> FMO04018.5prime
TTATACGAAGTTATCAGTCGACATGATCTCGCAGCTGGGACGGATTAGCA
TCATGAGTGCGGTGCTTTTGGCATTTGCGGCCATCGTATTTGCCAGCAGC
TCGGAGAAAACCGAACTCGATCCCAATGCCACCTGCAACTACACGCTGGT
GAAGAAGAAGACCTTGGGGGTGGATCCCTCGTTCTGGAAGAAGTTCTTCA
AGCACCTCATACCCTTCACGAGTTCGAGGGGCAAAATGCAGTTCATACTC
TTCAAGCGGGACTTCGCGGACTGCGGAAGGGAACTGTTCGTGGGCGATGT
GGAAAACCTGAGGAACTCGGGCTTCGATGCACGTCATCAAACAAGGATAG
TCATTCATGGCTGGATGAGTCAGAGCAAAGGTTCGCATATAAGGAAGGTT
AAGAACGCATACCTCAGCCTGACCGATCCGGGACCCAACGGAGAGCCCGC
CCCCTACGAGGACTTCAATGTGATCGTATGTGACTGGAGCAAGACTTCCA
CGAACGTAAACTACTACGAGGTGGCCAAGACGGTGGAGGACATGGGAGCC
CTGCTGGCGGAACTGGTGCGCTATCTGAACCAGGAGGCGAACATGCACTA
CGACGACGTATACGTCATTGGACACTCTCTGGGAGCGCAGATCGCCGGCA
GTGCTGGCAAGCAGATAATGCCATATCGATTCAACACCATATACGCTCTG
GATCCGGCGGGTCCACAGTTCCGGGAGAAGAGCGACGAGTACCGAATCGA
TGCTAGTGACGCCTCCTATGTGGAGTCCATTCAAACCAGCGTTAGCTTTG
GCTTCGAGCAGCCCGTGGGACACGCCACCTTCTATCCCAACTATGGGGAA
GAATCAGAAGAAATGCTATGTCTATGGCTGTTCTCATAGAGATCCCATGA
CTACTTCATAGAGTCGCTGACGAGTCCGGCGGGATTTTGGGGACCGCGCT
GCGAGCGTCACGATGATGGCACCTGGCCTGCTCTAATGAGCGATGGAGAG
TTCCGGATGGGGCGGGAGCCTCATCCCAGAACGACCTTTCTAATGTGAAC
TAACTCAAGCACCTATGCATGGGCCACAGGGTGCAACGACGCTTCCACGG
TAATTGATTGAATTCACGGAAAAGGCAAGCTTCTAGACTTCGTTGGGCCG
GCCAGGTAATGGCTATACTCATATCTAAATCTCATAAATCGTAAT
FMO04018.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4267-RB | 2182 | CG4267-RB | 144..1212 | 22..1080 | 4905 | 98 | Plus |
| CG4267-RA | 1322 | CG4267-RA | 144..1212 | 22..1080 | 4905 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2243558..2244234 | 344..1020 | 3185 | 98.7 | Plus |
| 2L | 23513712 | 2L | 2242692..2242946 | 92..346 | 1275 | 100 | Plus |
| 2L | 23513712 | 2L | 2242521..2242591 | 22..92 | 355 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:32:40 has no hits.
FMO04018.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:52:09 Download gff for
FMO04018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4267-RA | 140..1133 | 15..1011 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:16:43 Download gff for
FMO04018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4267-RA | 140..1133 | 15..1011 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:10:07 Download gff for
FMO04018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4267-RA | 140..1133 | 15..1011 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:10:07 Download gff for
FMO04018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2242693..2242945 | 93..345 | 100 | -> | Plus |
| 2L | 2242517..2242591 | 15..92 | 96 | -> | Plus |
| 2L | 2243560..2244262 | 346..1044 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:52:09 Download gff for
FMO04018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2242517..2242591 | 15..92 | 96 | -> | Plus |
| arm_2L | 2242693..2242945 | 93..345 | 100 | -> | Plus |
| arm_2L | 2243560..2244262 | 346..1044 | 98 | -> | Plus |
