FMO04019.5prime Sequence
690 bp (690 high quality bases) assembled on 2008-08-11
> FMO04019.5prime
CCTTCTTATCGCCTGTGGATCTGTCCAGTTCCCAGGTGTGCTGACCTTGC
CGGAGGCACTCCCAGCCAAATCTTCATCGGCCGCTGGAGGCGGAAACGGA
GGTGGAGCCGGGGGAGCCGTCACTGCCCCGTCAGCAGGAGACACCAGCAA
GGACTACGACTACGAGGAGGACCAGCAGCGGGCTCCGGGAAACCTGGCCA
AGTCGACCGCTGATCCCAAAGTTCCAGAGCCATACTTCGAGCACAGCGAT
GTGGATATCTATGTGCCGCAGAACGCGACCAGCGCCAAGTTGGAGTGCCC
AGTTAAAAATTATAATGCTGCACACCACGTCGTTCTCTGGTACAAGGAGA
AGGTACAGGTATCCAGCGGAATGAATATATTCAACCACATCTATGCCCTG
GACGAGCAGTTCTCCCTGACCGTTCCCCTGGCATCCAATGCCACCGAGGA
GCGCTACGAGTGCGAGGTACTGCCGAACAAAGTGCGACACACGGCTACCA
TTCGCTTTGGCCCGGAGCCAAGCACCCCGGCTCCATCTCTGCTTCCGGCA
CCGGCGGGCACATCTGCTTCCTCCGTCAACGATTCGGCGGCTCACGGACG
GGACATTAGCCTCTGGCTGCTGGGCCTCTTTCTGGCCCCGCTCCAGTTGG
CAGTGACCTTTCGGTTCGCAAGCTTTTCTAGACCATTCGT
FMO04019.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6044-RG | 1652 | CG6044-RG | 250..916 | 1..667 | 3335 | 100 | Plus |
| CG6044-RA | 1484 | CG6044-RA | 250..916 | 1..667 | 3335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22407454..22407804 | 317..667 | 1755 | 100 | Plus |
| 2R | 25286936 | 2R | 22407040..22407325 | 32..317 | 1430 | 100 | Plus |
| 2R | 25286936 | 2R | 22404426..22404462 | 1..37 | 185 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:33:02 has no hits.
FMO04019.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:29:44 Download gff for
FMO04019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6044-RA | 250..926 | 1..677 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:17:12 Download gff for
FMO04019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6044-RA | 254..930 | 1..677 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:20:56 Download gff for
FMO04019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6044-RA | 250..926 | 1..677 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:20:56 Download gff for
FMO04019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22407455..22407814 | 318..677 | 98 | | Plus |
| 2R | 22404426..22404460 | 1..35 | 100 | -> | Plus |
| 2R | 22407044..22407325 | 36..317 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:29:44 Download gff for
FMO04019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18294549..18294830 | 36..317 | 100 | -> | Plus |
| arm_2R | 18294960..18295319 | 318..677 | 98 | | Plus |
| arm_2R | 18291931..18291965 | 1..35 | 100 | -> | Plus |
