FMO04020.5prime Sequence
639 bp (639 high quality bases) assembled on 2008-08-11
> FMO04020.5prime
TATAGCATACATTATACGAAGTTATCAGTCGACATGTGCTGCTGGTGTGC
ACGTGTCTACTGGACGGTTCTGCACAATCTCCTGGCTCGCATGATGGACA
GCCTGATGGAAGTCAGATCGCCCACCTTCTGTAGCTGCTGCTTCGGTTAT
CAGCGGCAGGCCAGTCAGGAAGGTGACGTCGCAGAACGGGTTTCCAGCAC
CGACGACGATCCACAACAGCAGCCCCGTGAGGATTACGTCATTGTGGACG
ATGCCGATGTCAACTACGCGGAGATTGAGGAGAGGCATGTGGAAAAGGAG
CAGTACTACTTCACAGTGGATCGTCCTACGGCGGAGCGAATGCTCCATGG
ACGAGAGGACGGGTCCTGCCTGGTTCGACCTTTCAAGGCAGCCGACCAGT
GGATCCGTTACATAGTGAGCATCTGGGCGGCGGATCAGTACTATCACCTG
TTCATAAGGCAAGTGGATAGGAGACAACGCTATGCCATTGGTCAGAAGAA
GTCTCAGGAGCGCTGCTTCGGATCCCCCTCGGAAATCGTGGAGTTCTACA
CGGAGCATCCACTTCTCTGCACCAACAAGGTCCGGAGCCAGTGCGTCCAA
CTCCGTCCCATCAGTTACGCTGCAAGCTTTCTAGACCAT
FMO04020.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:33:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15529-RB | 1393 | CG15529-RB | 122..710 | 33..621 | 2945 | 100 | Plus |
| CG15529-RA | 965 | CG15529-RA | 122..710 | 33..621 | 2945 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:33:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30152642..30153016 | 247..621 | 1875 | 100 | Plus |
| 3R | 32079331 | 3R | 30152180..30152394 | 33..247 | 1075 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 19:33:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 1731 | 4648 | 1731 DMTN1731 4648bp Derived from X07656 (g8700) (Rel. 36, Last updated, Version 6). | 2562..2606 | 166..210 | 126 | 75.6 | Plus |
FMO04020.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:41:47 Download gff for
FMO04020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15529-RA | 119..715 | 30..628 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:17:13 Download gff for
FMO04020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15529-RA | 116..712 | 30..628 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:22 Download gff for
FMO04020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15529-RA | 119..715 | 30..628 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:22 Download gff for
FMO04020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30152177..30152394 | 30..247 | 99 | -> | Plus |
| 3R | 30152643..30153021 | 248..628 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:41:47 Download gff for
FMO04020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25977899..25978116 | 30..247 | 99 | -> | Plus |
| arm_3R | 25978365..25978743 | 248..628 | 99 | | Plus |
