FMO04022.5prime Sequence
538 bp (538 high quality bases) assembled on 2008-08-11
> FMO04022.5prime
ACATTATACGAAGTTATCAGTCGACATGTCGGCCGCAGCTAGTAATTCCA
GCAAGATGATGACATCGCCCGGCGATATGTTTACCCTGGAGAATCCTGTC
TTTTGCTGCTATCTTTTTTGGTCCACAGTCCTGGTGGTGAAGATGCTGCT
CATGTCGCTGCTAACGGCCGTTCAGCGTTTCCGGTATAAGATCTTTCCCA
ACCAGGAGGATCTGTTCTTCAAGAATCTTGAAGTGCAATTCGATGATCCG
CATGTGGAGCGGGTCAGAAGGGCCCATCGCAATGACATGGAGAACATTCT
GCCGTATTTTATCATGTCCTTGATTTATATCAGTACCAATCCGAATGCCG
ATGTGGCCTGCATACTGTTCCGAGTGGCCTCCGTGGCCAGGATCATACAC
ACTCTGGTTTACGCCGTTTATCCGGTGCCGCAGCCATCGAGGATTCTAGC
CTTCGCCACCATGCTACTGATCACCTTCTACATGGCCGCCGTGGTCGCCC
TGCGTACCCTAAGCTTTATAGCAAGCTTTCTAGACCAT
FMO04022.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:25:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33178-RC | 825 | CG33178-RC | 50..545 | 25..520 | 2480 | 100 | Plus |
| CG33178-RA | 585 | CG33178-RA | 50..545 | 25..520 | 2480 | 100 | Plus |
| CG33178-RB | 621 | CG33178-RB | 251..581 | 190..520 | 1655 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:25:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15083486..15083737 | 269..520 | 1260 | 100 | Plus |
| X | 23542271 | X | 15082876..15083041 | 25..190 | 830 | 100 | Plus |
| X | 23542271 | X | 15083255..15083337 | 189..271 | 415 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:25:02 has no hits.
FMO04022.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:30:36 Download gff for
FMO04022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33178-RA | 43..549 | 18..524 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:15:49 Download gff for
FMO04022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33178-RA | 43..549 | 18..524 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:02:20 Download gff for
FMO04022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33178-RA | 43..549 | 18..524 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:02:20 Download gff for
FMO04022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15083488..15083741 | 271..524 | 99 | | Plus |
| X | 15082869..15083041 | 18..190 | 98 | -> | Plus |
| X | 15083257..15083336 | 191..270 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:30:36 Download gff for
FMO04022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14976902..14977074 | 18..190 | 98 | -> | Plus |
| arm_X | 14977290..14977369 | 191..270 | 100 | -> | Plus |
| arm_X | 14977521..14977774 | 271..524 | 99 | | Plus |
