FMO04023.5prime Sequence
1198 bp (1019 high quality bases) assembled on 2008-08-11
> FMO04023.5prime
ATAGCATACATTATACGAAGTTATCAGTCGACATGTGCCTTTCATCCCCG
ATTCCCGGCCAGAAACAGGCGACGTCTGTTGGCCACTGCAACGGATCGTG
CAGCCTGGACAGGAATGGCAACCGCAGCGCAGCCATTGTCCCGAATGGAG
GAGAGCTGAAGCACAGAGGCCATGCCACAGACGCTACATCACACACCCTG
GTCAAAGATGACGACAATTTGGGCTACAAGGAGGAGAACGCGGTCTACAA
GGAGCAGCAGCTGCTGCAGCAACAGGACCAGACGCTGAAGGAGGCGGAGC
AGGTGGAGGAGGAAGAGGAGTACCACCCGCAGATCAGATGGCCGGATCTG
GGAGCACAGGCATTCCTGCACATCGGTGCCCTCTACGGACTGTACCAGCT
CTTCTACGCGAACTTCTACACATTCCTCTGGGTGGTGGTCACCGTTTGGG
TCTCCGGCATCGGCATCACGGCGGGAGCCCATCGCCTCTGGTCCCACAAG
TCCTACACTGCATCGCTGCCCCTGAGGATTCTGCTGGCCTTTGCCTTTTC
GATCGCCGGCCAGAGAGATGCCTACACGTGGGCCCTTGATCACAGGATAC
ATCACAAGTTCTCGGAGACAGACGCCGATCCGCACAATGCGAAGCGTGGT
TTCTTCTTCGCCCACGTGGGCTGGCTGTTCCTAACGCCCCATCCCAAGGT
GGTGGCCAAGAGGAAGGTCATCGACATGTCCGATCTGGAGGCGGATGCCG
TCTGCATGTTCCAGCGGAAGTACTACATACCGCTCTTCGCGCTCTGCTCC
ATCATCCTGCCGGTGGCCGTGCCCTGATACTTCTGGAACGAGGATCTCTG
GATGTCCTTCTGGATCAACTTCAACATGCGCTTCACCTGGACCCTCAACG
TGGCCTTCTTCGTGACAGCGTGCGCACATGTACGGCAACAAGCCGTACGA
CAGAACCTCATGTCCACTGAGCTCCCATTGTCTCCTGCTGCATGGGAGAG
GATGGCACAATTACCACCACGTTTCCCTGGACTACAGACGGCGAGTTGCA
ACTACAGCTCAACATCACCACGCTCATCGACTTTGGCGCCTGGCTAGCCT
GGCATGACGTAAATCGATCCTGGACTGCTTGAGGAAGACCTAATGCGCAT
GATCGCTCCTGACAAAACATGCCCCAGATCCGAGTGGGGGCTTCGGTT
FMO04023.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:26:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9743-RA | 1733 | CG9743-RA | 192..1300 | 31..1116 | 4985 | 97.7 | Plus |
| Desat1-RD | 1934 | CG5887-RD | 588..662 | 603..677 | 225 | 86.7 | Plus |
| Desat1-RB | 1978 | CG5887-RB | 632..706 | 603..677 | 225 | 86.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:26:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30198494..30198894 | 432..32 | 2005 | 100 | Minus |
| 3R | 32079331 | 3R | 30197098..30197491 | 952..561 | 1855 | 99.2 | Minus |
| 3R | 32079331 | 3R | 30197551..30197682 | 563..432 | 660 | 100 | Minus |
| 3R | 32079331 | 3R | 12446148..12446222 | 603..677 | 225 | 86.7 | Plus |
| 3R | 32079331 | 3R | 30186709..30186785 | 676..600 | 205 | 84.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:26:21 has no hits.
FMO04023.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:57:37 Download gff for
FMO04023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9743-RA | 188..1300 | 25..1116 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:15:50 Download gff for
FMO04023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9743-RA | 186..1298 | 25..1116 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:14:27 Download gff for
FMO04023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9743-RA | 188..1300 | 25..1116 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:14:27 Download gff for
FMO04023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30197097..30197488 | 564..952 | 98 | <- | Minus |
| 3R | 30197551..30197681 | 433..563 | 100 | <- | Minus |
| 3R | 30198494..30198894 | 32..432 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:57:37 Download gff for
FMO04023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26022819..26023210 | 564..952 | 98 | <- | Minus |
| arm_3R | 26023273..26023403 | 433..563 | 100 | <- | Minus |
| arm_3R | 26024216..26024616 | 32..432 | 100 | | Minus |
