FMO04026.5prime Sequence
436 bp (436 high quality bases) assembled on 2008-08-11
> FMO04026.5prime
ACATTATACGAAGTTATCAGTCGACATGGAGGAGGACGATCCCATGGGCC
AGTTTGAGGCTGGGGAGGAGAAGTCGATTGTGATGCGGGTTCCAAAGCCT
TTGCCGCCGCCCAGTGAATTCACCCCAACCCCCCTGCTTGGCTCGCGTTG
TTGGCATCCGATAATGTGGCAAGACCCTCCGGAGCCGCCGAAGCCCAAGA
AAAAGAAAACGAAAACGCAGCTGGACGACGAGGGCAACGAGGTGGTCATT
GAGCTCAGCGAGGACGAGTCGTCCGACGAGGAGGAGCAGGAGCTGCCCCA
CCATCGCATCATCCGGAACATCCGGCGATTCTTTGCGGAGGTGGGCGACA
ACCAGGAGCTGCGCACGAACACCATTGAGAACATGCTGATGGCCCTGCCC
AGCGCCTCCAAGGCCAAGGCAAGCTTTCTAGACCAT
FMO04026.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:11:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42319-RD | 1466 | CG42319-RD | 886..1280 | 24..418 | 1975 | 100 | Plus |
| CG42319-RC | 890 | CG42319-RC | 310..704 | 24..418 | 1975 | 100 | Plus |
| CG42319-RB | 1043 | CG42319-RB | 250..644 | 24..418 | 1975 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:11:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13263492..13263666 | 116..290 | 875 | 100 | Plus |
| 2R | 25286936 | 2R | 13263797..13263928 | 287..418 | 660 | 100 | Plus |
| 2R | 25286936 | 2R | 13262906..13262997 | 25..116 | 460 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:11:54 has no hits.
FMO04026.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:49 Download gff for
FMO04026.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42319-RB | 250..644 | 24..418 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:16:24 Download gff for
FMO04026.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42319-RC | 266..660 | 24..418 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:44:41 Download gff for
FMO04026.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42319-RB | 250..644 | 24..418 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:44:41 Download gff for
FMO04026.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13262906..13262997 | 25..116 | 100 | -> | Plus |
| 2R | 13263493..13263665 | 117..289 | 100 | -> | Plus |
| 2R | 13263800..13263928 | 290..418 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:49 Download gff for
FMO04026.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9150998..9151170 | 117..289 | 100 | -> | Plus |
| arm_2R | 9151305..9151433 | 290..418 | 100 | | Plus |
| arm_2R | 9150411..9150502 | 25..116 | 100 | -> | Plus |
