FMO04027.5prime Sequence
346 bp (346 high quality bases) assembled on 2008-08-11
> FMO04027.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGAAGTACCTGACGT
GTGTGCTGCTCCCGTTGGCTTTAATTCCGACTCTGATCGGCGCTCATCCC
AGCACAGTGGTGGTGAATGGCGTCTGTCTGACTTGTCCCAATCCGAATGG
TGAACCCGTCTACCTGGATGGCCAGCAGTACCGCAGCTTCTCCTCATCCC
CTGGCGATGGTAATGTGGTCATTTCCCGTGGAAATGACGGTAGTGGCGGT
GGAGGTGGCACCATTTACCGGAGGGGTGGTAATACCATCGTCAATGGCAG
ATGTCAGCACTGCAACGTGGATCCCTATGCAAGCTTTCTAGACCAT
FMO04027.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:28:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5791-RB | 629 | CG5791-RB | 129..422 | 35..328 | 1470 | 100 | Plus |
| CG5791-RC | 1193 | CG5791-RC | 21..314 | 35..328 | 1470 | 100 | Plus |
| CG5791-RA | 350 | CG5791-RA | 22..315 | 35..328 | 1470 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:28:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22087429..22087622 | 135..328 | 970 | 100 | Plus |
| 3R | 32079331 | 3R | 22087203..22087260 | 35..92 | 290 | 100 | Plus |
| 3R | 32079331 | 3R | 22087317..22087361 | 92..136 | 225 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:28:48 has no hits.
FMO04027.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:19 Download gff for
FMO04027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5791-RA | 71..373 | 35..336 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:17:22 Download gff for
FMO04027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5791-RA | 71..373 | 35..336 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:15:43 Download gff for
FMO04027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5791-RA | 22..324 | 35..336 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:15:43 Download gff for
FMO04027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22087429..22087631 | 135..336 | 98 | | Plus |
| 3R | 22087203..22087260 | 35..92 | 100 | -> | Plus |
| 3R | 22087318..22087359 | 93..134 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:19 Download gff for
FMO04027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17912925..17912982 | 35..92 | 100 | -> | Plus |
| arm_3R | 17913040..17913081 | 93..134 | 100 | -> | Plus |
| arm_3R | 17913151..17913353 | 135..336 | 98 | | Plus |
