FMO04028.5prime Sequence
902 bp (902 high quality bases) assembled on 2008-08-11
> FMO04028.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGTCGAAATTTCTG
TCCCAAGCCGCCCTAAATACGCTGCGAAACACGCGCCTGGGGTCGCGGCA
ACTGGTGCGCAGTTTTAAGGGCATCTCCAACACGCGTAACCATCGCATAC
CGGCTCACCAGGAATCGGGATGTGGTCACTCAGTGGGATGCGGGCTGCTA
GAGTTGCGGATGCCGGTGGCGTGCAGGAGGAGCATGTTCATCCAGACGCA
GGACACTCCGAATCCGGAGAGCTTGAAGTTCCTGCCCGGCGTGGACGTCC
TGGGAAAGGGGAACACGTACGACTTCCCCAACGGAACCACCGCCCACAAC
AGTCCTTTGGCCAAATTGCTGTTCCGCGTGGAGGGCGTTAAGGGCGTGTT
CTTTGGCGCCGACTTCGTCACCATCTCGAAGCAGGAGGGCGCCGAGTGGA
GCCTGATTAAGCCAGAGGTGTTTGCCGTCATAATGGACTTCTTTGCCAGC
GGCTTACCAGTTCTCAACGATGCCCAGCCCAATGCGGACACCGAGATCCT
CGAGGACGACGACGAGACGGTAATGATGATCAAGGAGCTGCTGGACACGC
GCATCCGACCCACCGTCCAGGAGGACGGCGGCGACATCGTCTTCATGGGC
TACGAGGGCGGCGTGGTCAAGCTAAAGATGCAAGGCTCCTGCTCCTCCTG
TCCCAGCTCCATTGTGACGCTGAAGAACGGAGTGCAGAACATGCTGCAAT
TCTACATACCGGAGGTGGAGTCCGTTGAGCAGGTCTTCGACGAGGCGGAC
AGGATGATCGAGAGCGAGTTTGAGCGCTTCGAAAAGAACCTCAAGACGCT
CAAGCAGCAGGAGCCCAGTGGCGGCGGTCCCCATGCAAGCTTTCTAGACC
AT
FMO04028.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:40:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33502-RA | 1060 | CG33502-RA | 58..906 | 36..884 | 4245 | 100 | Plus |
| CG32857-RA | 1059 | CG32857-RA | 57..905 | 36..884 | 4245 | 100 | Plus |
| CG32500-RA | 1084 | CG32500-RA | 82..930 | 36..884 | 4245 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:40:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 21609511..21610035 | 884..360 | 2625 | 100 | Minus |
| X | 23542271 | X | 21615603..21616127 | 884..360 | 2625 | 100 | Minus |
| X | 23542271 | X | 21621695..21622219 | 884..360 | 2625 | 100 | Minus |
| X | 23542271 | X | 21611086..21611342 | 360..104 | 1285 | 100 | Minus |
| X | 23542271 | X | 21617178..21617434 | 360..104 | 1285 | 100 | Minus |
| X | 23542271 | X | 21623286..21623542 | 360..104 | 1285 | 100 | Minus |
| X | 23542271 | X | 21611401..21611469 | 104..36 | 345 | 100 | Minus |
| X | 23542271 | X | 21617493..21617561 | 104..36 | 345 | 100 | Minus |
| X | 23542271 | X | 21623601..21623669 | 104..36 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:40:13 has no hits.
FMO04028.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:03 Download gff for
FMO04028.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32500-RA | 82..930 | 36..884 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:17:24 Download gff for
FMO04028.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32857-RA | 36..884 | 36..884 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:22:01 Download gff for
FMO04028.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32500-RA | 82..930 | 36..884 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:22:01 Download gff for
FMO04028.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 21611086..21611342 | 104..360 | 100 | <- | Minus |
| X | 21611402..21611469 | 36..103 | 100 | | Minus |
| X | 21609511..21610034 | 361..884 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:03 Download gff for
FMO04028.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 21480538..21481061 | 361..884 | 100 | <- | Minus |
| arm_X | 21482113..21482369 | 104..360 | 100 | <- | Minus |
| arm_X | 21482429..21482496 | 36..103 | 100 | | Minus |
