FMO04029.5prime Sequence
666 bp (666 high quality bases) assembled on 2008-08-11
> FMO04029.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTTCTCCAGCCA
CAGGACATTGAAGAGGAGGACGCCTGCCCAGGGCATTGACCGCCGGGAGT
ACATTGGTCACCTGGTCGATGAGTATTATACGACAACCAACATCGAGGCC
CAGCAGCAGGTGACTGCTAATTTGGCCAATTTTGCATACGATCCCATCAA
CTGGTCGCATCTCCTGGAGGCGGACGCCTTGGATGTATTTGTGGCATCGC
TGGAGACACAGGATCAGCTATTAAAAGTGCACGGAATTGCGGCATTGTGT
AACCTTTGCCTGGACAAAACGGCTGCCAAATTTATCAGAGAGCAGCTAAA
ACTGCTAACCGGCCTCTTTGTGCGCACTGATCACCCGGAAATAGTACTTC
ACAGCCTGGCGCTCTTTTACCAATTACTGGAATTTGGTGAACGGACTGAA
CGGGATTTACTTCTGAGCCCTGCGGTGCTAAGGACGGTGCAAGAGTGGCG
GGTCAAGGCCCACGATGAACGCATCGTTAAACTTTGTCAGTTGCTGCTGC
AAGATTTCGCAACACGCACAGAGGTTGTCCAGCTGCAAAAGGCTTCCCCA
AACGTTCCGACAGCTGAGCAGCAAAGCAGTGAAGCAGGTGCAAGTGGTGC
AAGCTTTCTAGACCAT
FMO04029.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:12:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14881-RB | 1054 | CG14881-RB | 67..678 | 37..648 | 3060 | 100 | Plus |
| CG14881-RA | 966 | CG14881-RA | 67..555 | 37..525 | 2445 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:12:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16435355..16435690 | 313..648 | 1680 | 100 | Plus |
| 3R | 32079331 | 3R | 16435133..16435301 | 145..313 | 845 | 100 | Plus |
| 3R | 32079331 | 3R | 16434965..16435073 | 37..145 | 545 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:12:13 has no hits.
FMO04029.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:59:00 Download gff for
FMO04029.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14881-RB | 67..683 | 37..654 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:16:58 Download gff for
FMO04029.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14881-RB | 41..657 | 37..654 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:44:48 Download gff for
FMO04029.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14881-RB | 67..683 | 37..654 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:44:48 Download gff for
FMO04029.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16434965..16435073 | 37..145 | 100 | -> | Plus |
| 3R | 16435134..16435301 | 146..313 | 100 | -> | Plus |
| 3R | 16435356..16435695 | 314..654 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:59:00 Download gff for
FMO04029.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12260687..12260795 | 37..145 | 100 | -> | Plus |
| arm_3R | 12260856..12261023 | 146..313 | 100 | -> | Plus |
| arm_3R | 12261078..12261417 | 314..654 | 99 | | Plus |
