FMO04030.5prime Sequence
808 bp (808 high quality bases) assembled on 2008-08-11
> FMO04030.5prime
TATAGCATACATTATACGAAGTTATCAGTCGACATGGATCGTTGGCTAAA
TCGCGTTGCTGTTGTCACTGGCGCCAGTTCGGGAATCGGAGCTGCCTGTT
GCAAGGATTTGGTGTCCAAGGGCTTGGTGGTCGTGGGTCTTGCACGTCGC
GAGGACCGTCTGCAGGAGCTGAAGGCTTCGCTGCCAGCGGACCAGGCCAG
TCGTTTCCATGGACGCAAATGCGATGTGAGCCAGGAGCAGGAGGTGATCG
ATGCGTTCGCATGGATCGATGCAACACTGGGCGGTGCCGATGTGCTGGTC
AACAACGCTGGCATTGTTCGCCTCGGTGTGGGCATCACCCACGAGGGTAA
TGGCGCTGATCTTCGTGCCATTCTGGATACCAATGTCCTGGGCGTTTCGT
GGTGCACCCGCGAGGCTTTCAAATCACTGAAGAGACGCAATGTTAACGAT
GGACACATCCTGATTGTCAACAGTGTGGCCGGACACCGGGTGATCAACAA
CCCAGGCATCACCATGGGCATGTATTCGCCATCGAAGTACGCAGTCACCG
CTCTCACGGAGGTGCTGCGTCAGGAGTTCCACAACAACAAGACCCAGACC
AAGATTACGAGCATCAGTCCCGGTGCCGTGGACACCGAGATCATCGACAA
GGAGGCTCTCGTTGGCATTCCCGACTTTCCAATGCTCCGCTCTGAGGATG
TGGCCGATGCCTTTAGCTACTGCATCCAGACCCCGCCAAATGTCCAGATT
CACGAGCTGACCATCAGGCCTGTCGGCGAACCCTCGCAAGCTTTCTAGAC
CATTTCGT
FMO04030.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:33:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9360-RA | 1035 | CG9360-RA | 110..862 | 34..785 | 3710 | 99.6 | Plus |
| CG3301-RC | 814 | CG3301-RC | 38..751 | 33..749 | 290 | 70.4 | Plus |
| CG3301-RB | 1101 | CG3301-RB | 38..751 | 33..749 | 290 | 70.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:33:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11763906..11764481 | 609..34 | 2880 | 100 | Minus |
| X | 23542271 | X | 11763653..11763824 | 780..609 | 830 | 98.8 | Minus |
| 3R | 32079331 | 3R | 21275937..21276212 | 308..33 | 270 | 73.2 | Minus |
| X | 23542271 | X | 8974162..8974227 | 99..34 | 210 | 87.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:33:01 has no hits.
FMO04030.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:41:38 Download gff for
FMO04030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9360-RA | 110..862 | 34..785 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:17:08 Download gff for
FMO04030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9360-RA | 108..860 | 34..785 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:12 Download gff for
FMO04030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9360-RA | 110..862 | 34..785 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:12 Download gff for
FMO04030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11763647..11763823 | 610..785 | 98 | <- | Minus |
| X | 11763906..11764486 | 30..609 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:41:38 Download gff for
FMO04030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11657680..11657856 | 610..785 | 98 | <- | Minus |
| arm_X | 11657939..11658519 | 30..609 | 99 | -> | Minus |
