FMO04039.5prime Sequence
617 bp (599 high quality bases) assembled on 2008-08-11
> FMO04039.5prime
AGTTATCAGTCGACATGCGTCTAATCCAAACGGCAACCGGCGGTGCTGCT
GCGTCCGTTCTGCAGACCCACTCCCAGGCGCAGTACAACTACACCAGCAT
GCGTGAAGATGATATCGAGCTGGCCATTAAAGTGGTCATTGTTGGAAATG
GCGGCGTTGGCAAGTCATCAATGATCCAGCGCTATTGCAAAGGCATTTTC
ACGAAGGACTACAAGAAAACGATTGGAGTGGACTTCCTAGAGCGACAGAT
CGAGATCGACGGCGAGGATGTGCGCATCATGCTGTGGGACACCGCCGGCC
AGGAGGAGTTCGACTGCATCACAAAGGCGTACTACCGCGGCGCCCAGGCT
TCCGTCCTGGTCTTTTCGACGACGGATCGAGCATCCTTCGACGCGATCAA
GGATTGGAAGCGCAAGGTGGAGAACGATTGCAACGAGATACCCACAGTGA
TTGTGCAGAACAAGATCGATCTTATCGAACAGGCGGTGGTTACGGCCGAC
GAGGTGGAGACGCTGGCCAAGCTCCTCAACTGCCGGCTCATCCGCACCTC
CGTCAAGGAGGACATTAACGTGGCGTCCGTGTTTCGCTATCTGGCCACCA
AGTGCCATCAGCTAATG
FMO04039.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:25:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab23-RA | 2267 | CG2108-RA | 284..886 | 15..617 | 2985 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:25:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5681435..5681918 | 617..134 | 2390 | 99.6 | Minus |
| 3R | 32079331 | 3R | 5682620..5682741 | 136..15 | 610 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:25:40 has no hits.
FMO04039.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:57:28 Download gff for
FMO04039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab23-RA | 284..886 | 15..617 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:15:47 Download gff for
FMO04039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab23-RA | 276..878 | 15..617 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:14:12 Download gff for
FMO04039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab23-RA | 284..886 | 15..617 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:14:12 Download gff for
FMO04039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5681435..5681917 | 135..617 | 99 | <- | Minus |
| 3R | 5682622..5682741 | 15..134 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:57:28 Download gff for
FMO04039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1507157..1507639 | 135..617 | 99 | <- | Minus |
| arm_3R | 1508344..1508463 | 15..134 | 100 | | Minus |
