FMO04041.5prime Sequence
629 bp (629 high quality bases) assembled on 2008-08-11
> FMO04041.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGAAGAGCTGTGCG
GCGATTGGAGTCCTTCTGGTACTGCTACTTCAGTACGAAGTGGTTAGGAC
GGACAGCGATAGCAGCGACAGCAGCAGCAGCAGCAGTGGAGAGAAGAAGC
ACAAGCACTCCAAGACGGAGCACAAGTACAATTATCCTGCATATCCTAAT
CCGGGCTATCCTCCGTATCAAGAAATGGGAGGCTATCCTTCATATCTCTA
CAATCCGTACATGCCGTATCCTCCGTATCCTCAAATGGGAGGCTATCCTT
CATATCCCTACAATCTGTACATGCCCCCACCACCACCACCACCGCCACAC
CCGCAACAAGCTCCGCCACCATCAATGTATCCACCCGACCCGTCCGGATA
TCCAGGCGGCTATCCACCGCAGGGGGCTCCCGGACAGAATCCAGTTAACA
ACCCAAATGCGATCCCCAATCAGCCTCAGGCACAGCAGCCTGCCAGCGGC
CCGGGATCAGGGCCTGCCCCGAACTATCCTCCAGGCGGCTCGAGCGTTAT
TAATCATTCCCTTAAGGTCAACAAGGAATACAACGAGGACGGTCACCACC
AATCTTCAACGGCAAGCTTTCTAGACCAT
FMO04041.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:39:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16743-RB | 1013 | CG16743-RB | 257..832 | 36..611 | 2880 | 100 | Plus |
| CG16743-RA | 742 | CG16743-RA | 55..630 | 36..611 | 2880 | 100 | Plus |
| CG16743-RB | 1013 | CG16743-RB | 428..486 | 267..325 | 220 | 91.5 | Plus |
| CG16743-RB | 1013 | CG16743-RB | 488..546 | 207..265 | 220 | 91.5 | Plus |
| CG16743-RA | 742 | CG16743-RA | 226..284 | 267..325 | 220 | 91.5 | Plus |
| CG16743-RA | 742 | CG16743-RA | 286..344 | 207..265 | 220 | 91.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:39:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10972652..10973227 | 36..611 | 2880 | 100 | Plus |
| 2L | 23513712 | 2L | 10972823..10972881 | 267..325 | 220 | 91.5 | Plus |
| 2L | 23513712 | 2L | 10972883..10972941 | 207..265 | 220 | 91.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:39:54 has no hits.
FMO04041.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:57 Download gff for
FMO04041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16743-RA | 52..630 | 33..611 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:17:14 Download gff for
FMO04041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16743-RA | 70..648 | 33..611 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:21:53 Download gff for
FMO04041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16743-RA | 52..630 | 33..611 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:21:53 Download gff for
FMO04041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10972649..10973226 | 33..610 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:57 Download gff for
FMO04041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10972649..10973226 | 33..610 | 99 | -> | Plus |
