FMO04044.5prime Sequence
1046 bp (1035 high quality bases) assembled on 2008-08-11
> FMO04044.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGGCTAGAACCCGA
ATTCAGATGCTGCTACTTGTTGTTGCGCTGACGGCGGTGATAAGTGGAGC
AAGTGCCTCCAGCATACCGGAAGAGCTGCCCCACAATCCGCTCGAGCACG
ACCCCCTGCACCCCAGGCACTTCGACGGGGGCGAGCACAATGCCCAGTTT
GACCACGAAGCCTTCTTGGGCCCGGACGAGTCCAAGAAGTTCGACAGCCT
GACACCCGAGGAGAGCAGGCGGAGATTGGGCGTCATTGTGGACCGAATCG
ACGAGAACAAGGACGGGTCAGTCACATTGGCGGAGCTAAAGAACTGGATC
GCCTACACCCAGAGGCGCTACATCGAAGAAGACGTGGGTCGCGTGTGGAA
GCAGCACAATCCGGACAACAATGAGACCATAAGCTGGGATTCCTACATGC
AGACTGTCTACGGCTTCATGGATGATCTGAGCCCCGACGAGAAGGAACAG
GAGGAAAATGGAGTCAGCTACAAGAGCCTGCTGAAACGCGATCGGTACCG
CTGGTCGGTGGCCGACCAGGACTTGGATGACAATCTCACCAAGGATGAGT
TTACCGCCTTCCTGCACCCCGAGGACCATCCCAGCATGAAGGGTGTGGTT
CTGCGCGAGACCATTACCGATCTGGACAAGGACCACGATGGCAAGATCTC
GGTGGACGAGTACATTGGCGACATGTACCGATCGACGGGCGCGGAAGACG
AGGAGCCCGAGTGGGTGGCTAACGAAAGGGAGGCGTTCTCCACACATCGC
GACCTGGACAAAGATGGTTATTTGAACGAGGAGGAAGTGAAGCAGTGGAT
TGCGCCCCATGACTTCGATCATTCGGAGGCGGAGGCCAAGCACCTGCTGT
TCGAGGCCGATGCGGACCACGATGATAGTTGACAAAGGAGAAATACTAGA
CAGTACGACGTTTTCGTCGGCCTCCCAGGCCACCGATTTCGGCGAGGCCT
GGCCCGCCACGATGAGTCGCAGCTTTCTAGAACCATCGGTTGGCGC
FMO04044.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:37:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| scf-RA | 1600 | CG9148-RA | 55..1039 | 36..1017 | 4805 | 99.5 | Plus |
| scf-RB | 1386 | CG9148-RB | 1..825 | 196..1017 | 4005 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:37:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1298726..1299201 | 36..511 | 2380 | 100 | Plus |
| 3L | 28110227 | 3L | 1299318..1299828 | 510..1017 | 2310 | 99 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:37:19 has no hits.
FMO04044.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:02 Download gff for
FMO04044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scf-RA | 46..1039 | 27..1017 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:17:23 Download gff for
FMO04044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scf-RA | 100..1093 | 27..1017 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:20:14 Download gff for
FMO04044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scf-RA | 46..1039 | 27..1017 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:20:14 Download gff for
FMO04044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1298717..1299200 | 27..510 | 99 | -> | Plus |
| 3L | 1299319..1299828 | 511..1017 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:02 Download gff for
FMO04044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1298717..1299200 | 27..510 | 99 | -> | Plus |
| arm_3L | 1299319..1299828 | 511..1017 | 99 | | Plus |
