FMO04045.5prime Sequence
1218 bp (969 high quality bases) assembled on 2008-08-11
> FMO04045.5prime
TAGCATACATTATACGAAGTTATCAGTCGACATGTCGCGTCTCCTGTTCG
TGGCGCTGCTAGCCATAAGCTTGGGATATGTGGCGTCCAGCAGCAGCAAC
CACCTGCCAGCGGGCTTGGCCATGGACCTGGGACCAGGTGTCAACCTCAA
CGAGCGCTTCTTCGACCAGGTGCGGGCGCTCATCAAGCGGAGGCTCCAGG
AGAAGGGGCTCGCGAAGCCGGAACAGCCAGAGCTGGCAATGCCACTGACC
GACGATGATGCAGTGGCCCTGCAGAACCAACGCAGCTACGACAACGTGCC
ACTTCCGGCGGCCAGTGTGCCGACTCCCGTGCTCGTGGAGAACTGGCCCA
CCGAGCAGCACAGCTTTGGCCAGGTCACCGCCGTGGCCGTGGATCCGCAG
GGTAGTCCGGTGGTTTTCCATCGCGCCGAGCGCTACTGGGATGTAAACAC
ATTCAACGAGAGCAATATATACTACCTTATTGAGTACGGGCCCATCAAGG
AGAACACCATCTACGTGCTGGACGCAAAGACGGGCGCCATCAAGTCGGGT
TGGGGATCGAACATGTTCTACATGCCGCATGGCCTGACCATCGACTTGCA
CGGGAATTACTGGATCACGGATGTGGCCATGCACCAGGCTTTCAAGTTCA
AGCCCTTCAGCAACAAGCCTCTGCTGACCATTGGCAAGCGCTTCAGGCCA
GGATCATCCGTCAAGCATCTGTGCAAGCCCACATCCATTGCAGTGGCGAC
CACCGGAGAGTTCTTCATCGCCGATGGTTACTGCAACAGCCGCATACTTA
AGTTCAATGCCCGCTGGCAAGCTGCTACGAACGATTCCCAGCCACCCGAA
TTCCTCTCTTTGCAGGTGCCACACGCCATCACCTTGCTGGAACACCTCGA
TCTACTGTGCATCGCCGAACAGGGAGAACATGAAGGGTGGTCTGTCCCAA
AGCTGCCTTGATATCCTCCCAACGTGTGAGGGTTGACCCGGCCGGGCCAC
CCATCCAGAACCCGGACCTGGGTCCGCGTCTTCGAGTGGCCAGCTTCGGG
GACATATTGTTCGCCGTTATGACCCACATCATGCTGCCGGTGCGGATCAC
CATCGAATCCGCCCTCGGAAACGATCATCGGACATGAGGCAATTCAGATT
CCGCACTCATGCCGTCGAGTTCACCGAATCGGCGCCCTGTATGTGTATAC
GAGAAATCTGAAACAGAT
FMO04045.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:14:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pal2-RE | 2304 | CG5472-RE | 219..1382 | 32..1195 | 4995 | 96.3 | Plus |
| Pal2-RD | 1657 | CG5472-RD | 107..1270 | 32..1195 | 4995 | 96.3 | Plus |
| Pal2-RA | 1938 | CG5472-RA | 107..1270 | 32..1195 | 4995 | 96.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:14:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23688295..23688710 | 32..447 | 2080 | 100 | Plus |
| 2R | 25286936 | 2R | 23688933..23689131 | 448..646 | 995 | 100 | Plus |
| 2R | 25286936 | 2R | 23689191..23689306 | 645..760 | 580 | 100 | Plus |
| 2R | 25286936 | 2R | 23689513..23689613 | 848..950 | 415 | 98.1 | Plus |
| 2R | 25286936 | 2R | 23689367..23689446 | 759..839 | 340 | 97.5 | Plus |
| 2R | 25286936 | 2R | 23689714..23689849 | 1001..1131 | 240 | 88.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:14:48 has no hits.
FMO04045.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:16:27 Download gff for
FMO04045.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pal2-RA | 213..1303 | 24..1119 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:28:39 Download gff for
FMO04045.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pal-RA | 132..1222 | 24..1119 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:52:11 Download gff for
FMO04045.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pal2-RA | 101..1191 | 24..1119 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:52:11 Download gff for
FMO04045.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23688933..23689135 | 448..652 | 98 | -> | Plus |
| 2R | 23689199..23689306 | 653..760 | 100 | -> | Plus |
| 2R | 23689369..23689456 | 761..848 | 96 | -> | Plus |
| 2R | 23689514..23689613 | 849..950 | 98 | -> | Plus |
| 2R | 23688289..23688710 | 24..447 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:16:27 Download gff for
FMO04045.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19575812..19576233 | 24..447 | 99 | -> | Plus |
| arm_2R | 19576456..19576658 | 448..652 | 98 | -> | Plus |
| arm_2R | 19576722..19576829 | 653..760 | 100 | -> | Plus |
| arm_2R | 19576892..19576979 | 761..848 | 96 | -> | Plus |
| arm_2R | 19577037..19577136 | 849..950 | 98 | -> | Plus |
