Clone FMO04047 Report

Search the DGRC for FMO04047

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:40
Well:47
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG4688-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO04047.5prime Sequence

742 bp (742 high quality bases) assembled on 2008-08-11

> FMO04047.5prime
ATACATTATACGAAGTTATCAGTCGACATGTCTCAGCCCAAGCCGATTTT
GTATTACGACGAGCGCAGTCCGCCGGTCCGCAGTTGCCTTATGCTAATCA
AATTGCTCGATATAGATGTGGAGCTCAGGTTTGTGAATCTCTTCAAGGGC
GAGCAATTCCAAAAAGATTTCTTAGCGTTAAATCCCCAGCACAGTGTTCC
CACCCTAGTCCACGGTGATCTGGTGCTGACGGACAGTCATGCTATACTCA
TTCACCTGGCGGAGAAGTTCGATGAGGGCGGTAGTTTGTGGCCGCAGGAG
CACGCAGAACGGATGAAGGTTCTGAACCTCCTGCTCTTCGAGTGCTCCTT
TTTGTTCCGACGTGACAGTGATTTTATGTCGGCGACTGTCCGCCAGGGAT
TCGCCAATGTCGATGTGGCACATCATGAACGCAAGCTGACCGAGGCGTAT
ATTATCATGGAGCGTTACCTGGAAAATAGCGATTTTATGGCCGGGCCACA
GCTGACGCTCGCCGACTTATCCATCGTGACCACATTGAGCACCGTCAATC
TCATGTTTCCCCTGTCGCAGTTCCCACGTCTGCGGCGCTGGTTCACCGCG
ATGCAGCAGCTGGATGCCTACGAGGCCAACTGCAGTGGCTTGGAGAAGCT
CCGCCAAACGATGGAGAGCGTCGGTAGCTTTCAGTTCCCCATCGTCATCA
GCGGTAGTCACCGAGAAGGTGGAGGCAAGCTTTCTAGACCAT

FMO04047.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:07:03
Subject Length Description Subject Range Query Range Score Percent Strand
GstE14-RA 1008 CG4688-RA 60..755 28..724 3460 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:07:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13240536..13240760 499..724 1080 99.6 Plus
2R 25286936 2R 13240064..13240265 177..378 1010 100 Plus
2R 25286936 2R 13239788..13239941 28..181 755 99.4 Plus
2R 25286936 2R 13240323..13240446 378..501 620 100 Plus
Blast to na_te.dros performed on 2014-11-28 20:07:02 has no hits.

FMO04047.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:03:03 Download gff for FMO04047.5prime
Subject Subject Range Query Range Percent Splice Strand
GstE14-RA 60..759 28..730 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:16:26 Download gff for FMO04047.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4688-RA 61..760 28..730 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:38:40 Download gff for FMO04047.5prime
Subject Subject Range Query Range Percent Splice Strand
GstE14-RA 60..759 28..730 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:38:40 Download gff for FMO04047.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 13240539..13240764 502..730 98   Plus
2R 13240065..13240265 178..378 100 -> Plus
2R 13240324..13240446 379..501 100 -> Plus
2R 13239788..13239937 28..177 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:03:03 Download gff for FMO04047.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9127293..9127442 28..177 100 -> Plus
arm_2R 9127570..9127770 178..378 100 -> Plus
arm_2R 9127829..9127951 379..501 100 -> Plus
arm_2R 9128044..9128269 502..730 98   Plus