FMO04050.5prime Sequence
473 bp (473 high quality bases) assembled on 2008-08-11
> FMO04050.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGCCCATAGATACG
CGCGAGTTGATGGAGGCGATAGCCATCGTAGCGGACGAGCGCAACGTCCG
CGTCGCCGTCAAGCAGTCCGGCAAGGGAGCGGCAATCTGCGCCGCCTGCT
CCTTTGCGGGTGGCATGCTCCTGGGCCCCGTTGGGCTGGCGGTTGGCGGG
GCCGCCGGCGGAATCGCCGCCTACAAGATGACAAGCGGCACATTCCGTCC
GCTGGGCGAAGTCATCCTAAACGACCTGACGGACGCACAGCGAGAGCAGC
TGGTGCAGCACGTAACCATGGCCGTGGCCGACATACATCCCACCGACGTG
GTGATGCTGCTGCCGCTGATTGTCCAGAACGCCTCCATTCAGCAGGCTGT
GCTTAACACTGTCATGTCATTCGTGACCAACGAGTTGCGCATGCAGATTG
TGGACGCAAGCTTTCTAGACCAT
FMO04050.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:12:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3740-RA | 829 | CG3740-RA | 289..708 | 36..455 | 2100 | 100 | Plus |
| Mur2B-RC | 6772 | CG14796-RC | 44..262 | 237..455 | 1095 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:12:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1668527..1668745 | 455..237 | 1095 | 100 | Minus |
| X | 23542271 | X | 1668807..1669009 | 238..36 | 1015 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:12:31 has no hits.
FMO04050.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:23 Download gff for
FMO04050.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3740-RA | 289..714 | 36..462 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:15:37 Download gff for
FMO04050.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3740-RA | 271..696 | 36..462 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:07:58 Download gff for
FMO04050.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3740-RA | 289..714 | 36..462 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:07:58 Download gff for
FMO04050.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1668518..1668744 | 238..462 | 98 | <- | Minus |
| X | 1668808..1669020 | 23..237 | 96 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:23 Download gff for
FMO04050.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1562551..1562777 | 238..462 | 98 | <- | Minus |
| arm_X | 1562841..1563053 | 23..237 | 96 | -> | Minus |
