FMO04051.5prime Sequence
488 bp (477 high quality bases) assembled on 2008-08-11
> FMO04051.5prime
TACATTATACGAAGTTATCAGTCGACATGCTGTTCCACAAGGGCGGTCCC
ATGGTGGGACAATCCAGGGGCTACGCCTTCTTCACCTTTGCGCAGAACGA
GGGAGCCACCAATGCGCTACTGAAACTGGACGGAACCAGCGTGGGAAATC
GCTCGATAGCCGTGCGTTTGGCCAAGAACATTAAATATGATGAAACGCAG
AAGCCAAATCCGCGCCTGGATATACCGGCCTTGGGCACAGGTAAACGCGA
GGAGAAGGTCAGCAAAACGGAGGCCATTCGGGCCATTGAGGCCAAGCTGA
AAATGTTGGAGCGCCAGACAGACGACAATCTCGAGCTGAATACAGCGGGC
AGGGGCGAGGCCAACGTGCCCTTCATCCAGCGCTATCAGTTTAACAAGGA
TCGCGACGGTTCGCAGCGCTACGGAAAGTCATCGGCTCCATATCATCACC
AGCAGCGTCCCAAGCGCCACGCAAGCTTTCTAGACCAT
FMO04051.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:13:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14414-RE | 849 | CG14414-RE | 257..705 | 22..470 | 2215 | 99.6 | Plus |
| CG14414-RD | 825 | CG14414-RD | 233..681 | 22..470 | 2215 | 99.6 | Plus |
| CG14414-RA | 779 | CG14414-RA | 187..635 | 22..470 | 2215 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:13:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14581745..14582030 | 185..470 | 1400 | 99.3 | Plus |
| X | 23542271 | X | 14581579..14581675 | 93..189 | 485 | 100 | Plus |
| X | 23542271 | X | 14580966..14581039 | 22..95 | 355 | 98.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:13:04 has no hits.
FMO04051.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:31 Download gff for
FMO04051.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14414-RA | 187..641 | 22..477 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:15:48 Download gff for
FMO04051.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14414-RC | 241..695 | 22..477 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:08:14 Download gff for
FMO04051.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14414-RA | 187..641 | 22..477 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:08:14 Download gff for
FMO04051.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14581749..14582036 | 189..477 | 98 | | Plus |
| X | 14580966..14581039 | 22..95 | 98 | -> | Plus |
| X | 14581582..14581674 | 96..188 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:31 Download gff for
FMO04051.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14474999..14475072 | 22..95 | 98 | -> | Plus |
| arm_X | 14475615..14475707 | 96..188 | 100 | -> | Plus |
| arm_X | 14475782..14476069 | 189..477 | 98 | | Plus |
