Clone FMO04053 Report

Search the DGRC for FMO04053

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:40
Well:53
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG5697-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO04053.5prime Sequence

454 bp (454 high quality bases) assembled on 2008-08-11

> FMO04053.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTCCTGCAACG
AGAAGACAGCGCTTCTGGCAACGCAACAAGGACATCAGCAGCGGCAGCAG
CGGCAGCAGCAGCACATCATTGTCGTGCCCGCGACGGGGAAGGATCCAAA
GGATTATGAGCCCATTTTCACAACTGCTGACTATTCCTACGGACTGACGC
TCGAGGAGCTCCTGCCCTTCGCTCTGGATCCCTGGTGGCAGGCCGTACGG
CGCCTCAGCTGCGGGCTCCTGGGCCTGACTTTCCTGCTGACCCTGATTGC
TGGACTGGTTATGGCCTATTCCGACAGTGTCTGTCTCCCAAATAGAGCAA
TTAGCAGAAACGCGACCACCACGACAACGATGGCCACGCCACTATCCTTG
GCTCTCAATGGCTCCCAGCTGCTGATGGCCAGTTTAGCAAGCTTTCTAGA
CCAT

FMO04053.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:07:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG5697-RD 939 CG5697-RD 177..575 38..436 1980 99.7 Plus
CG5697-RC 888 CG5697-RC 126..524 38..436 1980 99.7 Plus
CG5697-RB 921 CG5697-RB 159..557 38..436 1980 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:07:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21016501..21016756 181..436 1265 99.6 Plus
3R 32079331 3R 21016285..21016427 38..180 715 100 Plus
Blast to na_te.dros performed on 2014-11-28 20:07:09 has no hits.

FMO04053.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:03:06 Download gff for FMO04053.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5697-RB 159..557 38..436 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:15:41 Download gff for FMO04053.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5697-RA 225..623 38..436 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:38:42 Download gff for FMO04053.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5697-RB 159..557 38..436 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:38:42 Download gff for FMO04053.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 21016285..21016427 38..180 100 -> Plus
3R 21016501..21016756 181..436 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:03:06 Download gff for FMO04053.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16842007..16842149 38..180 100 -> Plus
arm_3R 16842223..16842478 181..436 99   Plus