FMO04055.5prime Sequence
1225 bp (1043 high quality bases) assembled on 2008-08-11
> FMO04055.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGCTGGACGCG
GAGGTGCGAGAACTTATGCAACCCTTTGTGTTGAGTGATTACCAGGTGCA
GGAAGTGTACAGTCGCTTTTGCCTGGAAGTGGCCCGTGGACTTAAGCGGT
CCACGCATCCACAGGCCAACGTCAAGTGTTTTCCCACGTACGTGCAGGAT
CTGCCCACGGGCGACGAGATGGGCAAGTACCTGGCCCTGGATCTCGGCGG
TACCAACTTCCGAGTACTGCTCGTCTCGCTGAAAGGTCACCACGACGCCA
CGGTGGATTCTCAGATCTATGCCGTGCCAAAGGACCTGATGGTGGGGCCC
GGTGTGGACCTATTCGATCACATTGCGGGCTGCCTGGCCAAATTTGTGGA
GAAACACGACATGAAGACCGCATATCTGCCACTGGGCTTCACTTTTTCCT
TCCCTTGCGTGCAACTAGGCCTTAAGGAGGGCATCCTGGTACGCTGGACT
AAGGGATTCGATTGTGCTGGGGTTGAGGGCGAGGATGTGGGCCGCATGCT
GCACGAGGCCATTCAGCGGCGCGGAGATGCCGACATTGCCGTGGTGGCTA
TACTCAACGATACCACTGGCACCTTGATGTCCTGCGCCCATCGTAATGCA
GATTGCCGGGTGGGTGTCATTGTGGGAACTGGCTGCAATGCCTGCTACGT
TGAAGATGTTGAGAATGTGGACCTATTGCGCGCAGACTTTAAAAAAACGA
AGCGGAGTGTGATTGTAAATGCTGAGTGGGGCGCCTTTGGTGAGGGTGGT
CAGTTGGACTTTGTGCGCACCGAATACGATCGCGAAGTTGACGAAAAGTC
TCTAAACCGATCGGAGCAGCTGTTCGAAAAGATGACGGCGGGCATGTACT
TGGGCAACCTGTTGCGCCTTGTGCTACTTCGTGCCCTCGAGCGCAAGCTG
ATCTTTAAACAGAGCAGTCGACGTCAAGAATTCGCCAGCGTGCTGCAGAG
AACGAAGAGGTTTTCGAGAACGCGCTACAATTCGGAATCGAAGACGACTC
CTTCCCAGAGTTTGCAGCACAAGAAGATGTGAAAATCTGTTTGGTCTAAG
AAAGCCTCCGTGGAGAACTGCTGACTCTGAAATACATCTGCAGTGCTACT
AGCGACGCTACTAATGCATCGAATCATGGGCTGTGTACAAGAACTCAACG
CCGCGGGAATAGCTCGCCAGTGAAA
FMO04055.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:25:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hex-C-RA | 1493 | CG8094-RA | 66..1181 | 39..1146 | 5215 | 98.4 | Plus |
| Hex-A-RC | 4139 | CG3001-RC | 929..1045 | 156..272 | 210 | 78.6 | Plus |
| Hex-A-RB | 2512 | CG3001-RB | 714..830 | 156..272 | 210 | 78.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:25:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15219155..15220264 | 1141..39 | 4985 | 98.5 | Minus |
| X | 23542271 | X | 9586603..9586719 | 156..272 | 210 | 78.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:25:43 has no hits.
FMO04055.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:30:52 Download gff for
FMO04055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hex-C-RA | 60..1195 | 32..1158 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:16:44 Download gff for
FMO04055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hex-C-RA | 143..1278 | 32..1158 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:02:48 Download gff for
FMO04055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hex-C-RA | 60..1195 | 32..1158 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:02:48 Download gff for
FMO04055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15219135..15220270 | 32..1158 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:30:52 Download gff for
FMO04055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11106640..11107775 | 32..1158 | 97 | | Minus |
