FMO04057.5prime Sequence
525 bp (525 high quality bases) assembled on 2008-08-11
> FMO04057.5prime
TATAGCATACATTATACGAAGTTATCAGTCGACATGCGTGTTCGGAAAAT
CGCGCAAAGCGAATGTTATTGTGGAGTATCGTTAGCTAAGGCAAATTCAA
ATACCCCTAAAGTGCAGTGCTTGTGCAGTGATATACCTGGAATCAACCGA
GAAACGCATAAAAAGAAGGAATTATTGTATCATGGCCTACGGTTCAACCG
GCTGCCTCTTGCTGGGCCTTTTCTCCTTGCTGATGGTTTTCAATACAGCT
TCCGCGGTGCTGCGATGCTGGCGCTGTTCGACGGACGTCTCCAATGGCGA
GTTCTGCAACGATCCCTTCATGCCGGAGACCATTTCGGAGCAGCAGCGGT
ACTGGAGCTACGTGAACTGCACCTACTCGGTGGGCGCCAAATCGGTGAAT
GCCCGGCCTGTCTGCAAGAAACTGGTGCAAGAAGTCTACGGCAAGCGGGT
GATTTCGCGTTCCTGTTTTTACGAGGACATGGACGACTCGGCGGACAAGT
GCGCCCAGCAAGCTTTCTAGACCAT
FMO04057.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:33:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31676-RB | 1107 | CG31676-RB | 80..552 | 33..505 | 2350 | 99.8 | Plus |
| CG31676-RA | 1056 | CG31676-RA | 29..501 | 33..505 | 2350 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:33:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20840829..20841044 | 33..248 | 1080 | 100 | Plus |
| 2L | 23513712 | 2L | 20845340..20845528 | 246..434 | 930 | 99.5 | Plus |
| 2L | 23513712 | 2L | 20848555..20848627 | 433..505 | 365 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:33:52 has no hits.
FMO04057.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:59:49 Download gff for
FMO04057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31676-RA | 17..501 | 21..505 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:15:51 Download gff for
FMO04057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31676-RA | 18..502 | 21..505 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:18:18 Download gff for
FMO04057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31676-RA | 17..501 | 21..505 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:18:18 Download gff for
FMO04057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20845343..20845528 | 249..434 | 99 | -> | Plus |
| 2L | 20840817..20841044 | 21..248 | 97 | -> | Plus |
| 2L | 20848557..20848627 | 435..505 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:59:49 Download gff for
FMO04057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20840817..20841044 | 21..248 | 97 | -> | Plus |
| arm_2L | 20845343..20845528 | 249..434 | 99 | -> | Plus |
| arm_2L | 20848557..20848627 | 435..505 | 100 | | Plus |
