FMO04059.5prime Sequence
324 bp (324 high quality bases) assembled on 2008-08-11
> FMO04059.5prime
CTCAGCGAGGCCCGACCTTCGGGTGCCGAAACAGGACCGGACTCCGATGG
ACTTGATGGCCAGGACGCGGAGGACGTGCGAGGCGCCTATGGAGGTGGCT
ACGATATGCCAGCCCAGGCAATCTATCCCAATATTCCAATGGATCGGCTG
CAGATGCTCTTTGCCCAATACAGACCCACCAGTTACAGCGCCTATTTGAG
GAGTCCCACCTACGGCAATGTGAATGAACTTTATCGGCTGCCCGAGAGCA
AACGTCAAGTTAGATACCGGCAGTGCTACTTTAATCCCATCTCCTGCTTT
AGGAAGGCAAGCTTTCTAGACCAT
FMO04059.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:38:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AstC-RA | 1202 | CG14919-RA | 324..629 | 1..306 | 1530 | 100 | Plus |
| AstC-RB | 1199 | CG14919-RB | 324..626 | 1..306 | 1475 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:38:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11076927..11077067 | 179..39 | 705 | 100 | Minus |
| 2L | 23513712 | 2L | 11076738..11076864 | 306..180 | 635 | 100 | Minus |
| 2L | 23513712 | 2L | 11077122..11077161 | 40..1 | 200 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:38:24 has no hits.
FMO04059.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:25 Download gff for
FMO04059.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ast-C-RA | 324..635 | 1..314 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:15:34 Download gff for
FMO04059.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ast-C-RA | 322..633 | 1..314 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:20:53 Download gff for
FMO04059.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AstC-RA | 324..635 | 1..314 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:20:53 Download gff for
FMO04059.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11076732..11076864 | 180..314 | 97 | <- | Minus |
| 2L | 11076927..11077066 | 40..179 | 100 | <- | Minus |
| 2L | 11077123..11077161 | 1..39 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:25 Download gff for
FMO04059.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11076927..11077066 | 40..179 | 100 | <- | Minus |
| arm_2L | 11077123..11077161 | 1..39 | 100 | | Minus |
| arm_2L | 11076732..11076864 | 180..314 | 97 | <- | Minus |
