FMO04060.5prime Sequence
573 bp (573 high quality bases) assembled on 2008-08-11
> FMO04060.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGCACCAGGTACT
CAGCTACGAGACGGCGGTGCGGGCCAACAGCTCTCGGGAGTTCCGCGAGT
ACGTTTCCAAGCGCACCTGTGCCTCCCTGGTGCTAACGATTGGCTTCTTC
ATGCTGATAACAGGATACTTGCTCGGTAATTTTGTGGCCGAGCGCAAGTA
CCACATTCGCCAGATGACGAAAGACGGCGGCAGGTCCGTGAAACTGAGCA
GCGCCGAGTATGCCAGCCTGCAGGAGCTGCAATCATATCAGAAGGCCAAG
GATCAGCTGTTGCTGGCCGCCCAGGAGCTGGACAAGCTGCAGCAGCAGGA
CGAGAGCGAGCGGTATCTGGCCACGTCGCTGAACACGGAGATCTTCAACA
GGTACATATCCTGCACGCAGGATATACCGCCCAACACGAACATTGCGGCC
AGTCAGTTCACGGAACAGCTGATCGACAACACGGTGGCCAGGCAGCGCCA
CTGCTTGATGATCATCCAGCGGGTCATCGACAACCACCTGGCCAACAGCC
AGCTCGCAAGCTTTCTAGACCAT
FMO04060.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:25:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15522-RB | 1381 | CG15522-RB | 669..1187 | 37..555 | 2595 | 100 | Plus |
| CG15522-RA | 1101 | CG15522-RA | 389..907 | 37..555 | 2595 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:25:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29928178..29928572 | 161..555 | 1975 | 100 | Plus |
| 3R | 32079331 | 3R | 29927995..29928122 | 37..164 | 640 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:25:54 has no hits.
FMO04060.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:57:32 Download gff for
FMO04060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15522-RA | 383..918 | 27..568 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:15:48 Download gff for
FMO04060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15522-RA | 386..921 | 27..568 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:14:16 Download gff for
FMO04060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15522-RA | 383..918 | 27..568 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:14:16 Download gff for
FMO04060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29927989..29928121 | 27..163 | 97 | -> | Plus |
| 3R | 29928181..29928583 | 164..568 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:57:32 Download gff for
FMO04060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25753711..25753843 | 27..163 | 97 | -> | Plus |
| arm_3R | 25753903..25754305 | 164..568 | 98 | | Plus |
