FMO04061.5prime Sequence
508 bp (508 high quality bases) assembled on 2008-07-30
> FMO04061.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGTCTGAAGAAATCC
TTTTCGATTGCCTCCATGCAGAGATAGTCAATTATTGTCTGGATAGCAAT
AAGGAGCACGACCTGGCCACTTTGGAGTATATAGGCTTCACCACCGGCTA
CCGCCTGATTGAGCGGCTCACCCGTGAAGTTTCGCGTTTTAAGGACGAGT
TGGAGACTATGAAGTTTATATGCACCGACTTCTGGATGCTTATATACAAG
AAGCAAGTGGACAACCTGAGGACGAACAACCACGGAATGTACGTTGTGCA
GGACAAGGCTTTCCGCTTTCTGACTCGCATCTCGCCGGGCACCAAGCAGC
TGGAGCACGCGCCCAAGTTCGTGGCCTTCACGTGCGGGCTGGTGCGAGGA
GCTCTCAGCAATCTAGGCATTAACAGCACCGTGACGGCCGAAGTGCAAAG
CATACCCGCCTGCAAGTTTCACATAGAAGTGAACAGGAACGCAAGCTTTC
TAGACCAT
FMO04061.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Trs33-RA | 583 | CG6196-RA | 76..531 | 35..490 | 2280 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15350397..15350785 | 490..102 | 1945 | 100 | Minus |
| 3R | 32079331 | 3R | 15350851..15350920 | 104..35 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:24:14 has no hits.
FMO04061.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:33:17 Download gff for
FMO04061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6196-RA | 66..536 | 25..498 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:51:48 Download gff for
FMO04061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6196-RA | 90..560 | 25..498 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:01:51 Download gff for
FMO04061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trs33-RA | 66..536 | 25..498 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:01:51 Download gff for
FMO04061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15350392..15350783 | 104..498 | 98 | <- | Minus |
| 3R | 15350852..15350930 | 25..103 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:33:17 Download gff for
FMO04061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11176114..11176505 | 104..498 | 98 | <- | Minus |
| arm_3R | 11176574..11176652 | 25..103 | 95 | | Minus |
