FMO04062.5prime Sequence
948 bp (948 high quality bases) assembled on 2008-07-30
> FMO04062.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTGTGCAAAGAG
CCGAGTGGCTTCTCCTGGGGCCGGTGGCACCAGCCTGTGTTCCGAAGGCC
GCATCAGTTTATATTGCTTTCTGATTACTGCAGCTCTAGTCCTGATTCCC
TCGGTGCCCCAGAATCTTTATGGAGTGGTGCCACAGGTGTGGGGCGCCGT
CCTCTGGGGTCCATTTTTGTACTACGCCCTTATTAACATGATCATACGGT
TTGTGCTGCGGAACCACGACTACCAGGTGGCCATTAGGGCATCCTTCCTG
GGCTTTGCCATGGCCGTGAGTGTGCTGGTCATCTGCTTTGCTCCCACCGA
GTGGCAGCAATTTGGCGCCTACGGATGCTTCATGTCCCTTTTCCACTACT
CGGAGTTCCTCGTTATCGCCTTTGCCAATCCGCGCACTCTCAGTCTCGAC
TCCTTTATGCTGAACCACTCTGTGCACTATGGACTGGCGGCGGCAGCCAG
TTGGATCGAGTTCTCACTAGAGGTGTACTACCTGCCGCAGTTCAAGAGAT
ACGGATACATTTGGGTGGCGGGCGTGGTCCTGTGCCTGCTGGGCGAGATG
GTTCGCAAGGCAGCCATCATCACAGCTGGCCGGAGCTTCACTCACTTGGT
CCAGAATGAGAAACACTCGGAACACAAGCTAATAACAAGCGGGATCTACG
CCTACTGCCGCCACCCGTCTTATGTCGGCTGGTTCTGGTGGTCCATCGGA
ACCCAGATCGTGCTATTGAATCCCATCTGCATATGCATTTACACACTGGT
CAGCTGGCTGTTCTTCCACGATCGCATCTACGTCGAGGAGTACTCCCTGC
TCAACTTCTTCCAGTCGGACTATGTGCGCTATCAAAAGCGGGTGCCACGG
GCTGCCTTCATCCGGGGCTATCTGGTCGATGCAGCTTTCTAGACATCG
FMO04062.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:13:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ste14-RB | 1121 | CG11268-RB | 116..1012 | 37..930 | 4410 | 99.7 | Plus |
| ste14-RA | 1227 | CG11268-RA | 116..1012 | 37..930 | 4410 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:13:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13018685..13019061 | 274..650 | 1885 | 100 | Plus |
| 3L | 28110227 | 3L | 13019187..13019472 | 648..930 | 1285 | 98.3 | Plus |
| 3L | 28110227 | 3L | 13018381..13018623 | 37..279 | 1215 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:13:29 has no hits.
FMO04062.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:14:19 Download gff for
FMO04062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ste14-RA | 111..1015 | 29..934 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:44:24 Download gff for
FMO04062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11268-RA | 126..1030 | 29..934 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:03:43 Download gff for
FMO04062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ste14-RA | 111..1015 | 29..934 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:03:43 Download gff for
FMO04062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13019188..13019475 | 649..934 | 98 | | Plus |
| 3L | 13018688..13019059 | 277..648 | 100 | -> | Plus |
| 3L | 13018376..13018620 | 29..276 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:14:19 Download gff for
FMO04062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13011476..13011720 | 29..276 | 98 | -> | Plus |
| arm_3L | 13011788..13012159 | 277..648 | 100 | -> | Plus |
| arm_3L | 13012288..13012575 | 649..934 | 98 | | Plus |
