FMO04063.5prime Sequence
646 bp (646 high quality bases) assembled on 2008-07-30
> FMO04063.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGTTCGTCTTACTCG
GAGCACTCTGTCTGCTGCAGACGGCTAGCTTGGTGCCGGCACAGCTGTTT
ACTTTCCGCGATGGCAAGGTGGGCGTGAACTTCGCAGGATATCACGCAGA
TGCGGGACTCGGCGGACTCCTTACGGGCAACTCTGCCCACGGCGGACTCA
GCGCCTCGGCCGGAACACCTTGGGGCTCCCGGGCAGCCGCCGGTCTGGGC
GGCAATCTGGATGGACGCACAGCCGGCGTGGGATACGCCGCCGCCCAGGC
CAATCCCTCGGTGGGAGCCAGTGCGCTTCTGGGCGGCAGCGCCGGTGAAC
ATGGTTATATCGGAGCCGAGGCGCACAGTCCTGGTCGCACTGTGATCTCC
TCCTCGCAGCACTCAGTCCAGCCGGCATATCCTGCTGATCCTGTGCCCGT
CTCACCCACCACCGGCCCCGTCGTCACCAGCCACATCCAAAAGGTCAAGC
CGCCCAAGAAGTACTCGCTGATCAACCAAGATGCAAGGAGCGAGGCCAAG
GTGGTCCAGGCCCACAAGTACAAGTCCGTCCAGCGACCCCAGGCCGTGAA
CAATCGCTTCCTGGCGCCCCAGGCCCAAGCAAGCTTTCTAGACCAT
FMO04063.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9812-RE | 1223 | CG9812-RE | 131..724 | 35..628 | 2970 | 100 | Plus |
| CG9812-RB | 1313 | CG9812-RB | 221..814 | 35..628 | 2970 | 100 | Plus |
| CG9812-RD | 1574 | CG9812-RD | 221..718 | 35..532 | 2490 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23414492..23414766 | 537..263 | 1360 | 99.6 | Minus |
| 2R | 25286936 | 2R | 23414831..23415003 | 264..92 | 865 | 100 | Minus |
| 2R | 25286936 | 2R | 23413038..23413133 | 628..533 | 480 | 100 | Minus |
| 2R | 25286936 | 2R | 23419227..23419286 | 94..35 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:24:24 has no hits.
FMO04063.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:33:21 Download gff for
FMO04063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9812-RB | 217..814 | 27..628 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:51:49 Download gff for
FMO04063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9812-RB | 217..814 | 27..628 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:02:00 Download gff for
FMO04063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9812-RB | 217..814 | 27..628 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:02:00 Download gff for
FMO04063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23413038..23413133 | 533..628 | 100 | <- | Minus |
| 2R | 23414497..23414765 | 264..532 | 100 | <- | Minus |
| 2R | 23414832..23415000 | 95..263 | 100 | <- | Minus |
| 2R | 23419227..23419290 | 27..94 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:33:21 Download gff for
FMO04063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19302020..19302288 | 264..532 | 100 | <- | Minus |
| arm_2R | 19300561..19300656 | 533..628 | 100 | <- | Minus |
| arm_2R | 19302355..19302523 | 95..263 | 100 | <- | Minus |
| arm_2R | 19306750..19306813 | 27..94 | 94 | | Minus |
