FMO04064.5prime Sequence
1227 bp (1026 high quality bases) assembled on 2008-07-30
> FMO04064.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGGCATTTAACATGT
GTGCAAATTCGCTTTGCTTGGGCCTAGTTGCCCTTCTGGTTTTGGCCAAA
AGTAGCGACGCCTTGCAGGCAAAACGTTTCTTCGGTGTGGGCGAAAGGGT
GGAAGGGGACCAGCTCCTGGTCAAGGATGTGCTCCATTCCCGTCCAGCCG
GCGCCGGCGAGCTGCCCGGAGTGACGTTCACCTACGAGATTTTGGAGCCA
ATCACTTGCGTGGAAATTCTATCGGAGGAAAACATTTCGGCGGAGGTGAA
ATTCAGCTTGGTGAATCGCCTCATCGTGGGCATAATCCAATTGGCTGCCA
GCAATCAAAGCGTTAACCCATCAGCTCCCATTGTTCCACCAACCGTCGAG
TTCGATGTGACCATCATGGTGTTTGGCCTAAATGAGACCTCCAAGCATTT
CGATCCCTCACTGGTCATCAATCGTGATCAGCAATTTGAGGGCGAGATGG
AGCCCTACGAGGAAATCTTCCCGGAACCGGATCAATATGTTGAGGTATTT
GACAACAATAGACGCGATGACCTGGAGATCGACGAAGGTGATGACAATCT
GTCCGAGGAGGACATCGAGAGCTATACGGAAGGTCCATTCGTAACAGACT
ATTTCGATAAGCCAGACAAATACATTGAAGTTGGAAAAAGGCAGGCGGGC
GATGAACTTCTCTATGATTGCTATCAGACATCGCCGGATGATTCGGAAAA
GCCAACCAATCACTCGGTGGTTTCTACTACATCGACAATAATCTAATAAC
ATACGTGCGGTTTGCTATACTCGATCACTATGCCAATAGAAATATCTCGG
AGGCCGAATACCAAGCGCCGGTGGCAGAGTACAGTCACTATACGAGTGGC
ACCCTAAAGGCGGTCATCACCGACTACGATTCGAAAAGCCTTTTTGTCCA
GATGTACGTCTACGGATATTCGGGGGCGCAAGCGCCGCCCACCTATGAGC
CCTTCCTGCCGCCGCCGCTGTGGCAAATGCAATTCTGGAGTCCCGGACCA
AGCAATGCACTCCGCAACCTGACGCCGCTGCAGAACGCTGCACTTGCTTC
TGTCTGAACGGCAGCGACCACCCCGCCGCCAAGAATGTACAATGAATAGC
TGGAAACAGAGACTACGAACATCCGCCGAAAAAATGAGGTTGATAGAATC
GAGAGAAGAAAAGTTGAGAGATGTGTA
FMO04064.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:54:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5612-RA | 1507 | CG5612-RA | 98..1212 | 35..1145 | 5185 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:54:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27624230..27624648 | 699..281 | 2095 | 100 | Minus |
| 3R | 32079331 | 3R | 27625669..27625914 | 280..35 | 1230 | 100 | Minus |
| 3R | 32079331 | 3R | 27623654..27623976 | 1145..826 | 1000 | 94.2 | Minus |
| 3R | 32079331 | 3R | 27624046..27624174 | 825..698 | 595 | 99.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:54:25 has no hits.
FMO04064.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:48:20 Download gff for
FMO04064.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5612-RA | 92..1228 | 30..1161 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:51:50 Download gff for
FMO04064.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5612-RA | 90..1226 | 30..1161 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:23:43 Download gff for
FMO04064.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5612-RA | 92..1228 | 30..1161 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:23:43 Download gff for
FMO04064.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27623654..27623976 | 826..1145 | 94 | <- | Minus |
| 3R | 27624046..27624173 | 699..825 | 99 | <- | Minus |
| 3R | 27624231..27624648 | 281..698 | 100 | <- | Minus |
| 3R | 27625669..27625920 | 30..280 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:48:20 Download gff for
FMO04064.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23449768..23449895 | 699..825 | 99 | <- | Minus |
| arm_3R | 23449376..23449698 | 826..1145 | 94 | <- | Minus |
| arm_3R | 23449953..23450370 | 281..698 | 100 | <- | Minus |
| arm_3R | 23451391..23451642 | 30..280 | 99 | | Minus |
