FMO04069.5prime Sequence
1228 bp (1024 high quality bases) assembled on 2008-07-30
> FMO04069.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGTGGACGCCGC
CAGGCAGATGCTCGACGAGCTGATGGGCAGGAATCGCAACCTGCATCCCT
CGGAGGCGGGCGCCAAGGTCAATTGGGAGGATCCGGAGTTCTGTCAGTTC
TACAACGTTAAGTTCTGTCCGCACGATCTATTCATAAATACGCGCGCAGA
TCTGGGCCCCTGTGCCCGCATCCACGACGAGGAAGCCCGACATCTCTACG
AGGATGCTCGACCCTCGCAGCGGAAGCGTCAGTACGAGGATGAATTCCTG
CGCTTTTGCAATGTTATGCTGCACGATGTGGATCGAAAGATCCAGAAGGG
AAAACAGCGTTTGCTGCTAATGCAAAGGGATCAGCCCAATGTACCGGCGC
CACTGAGCAGGCACCAGGAGCAGCTTGCGAATCTGACGGCCCGGATCAAT
AAGCTGCTCTCTGAGGCAGAGGAAGCCGGCATTCGGGGTGACGTGGACCA
GGCCCAAGATCTAATGACCGTGTGCGAGGAGCTCAAGGAGGAGAAGGAAC
AGTTGGTACAGCAATACGAGGCCCATCACAAGGCCATCAGCAGCATCAGC
CTGACCAAGTCAGCGGAGGACGAGCTGCAGCATCACCCGCGCAGCAGTCC
GGTCACAAATCCCAGCGAAGAAAGTCCAACTACTCCTCTTCCAGCCGCCA
CCACGCTAGATGAAGCGCCGGATGCAGCTCCAAGTTCCGCACAAGCAGCT
GTCACAACGACTGACGATGCCGGTGAAGCAGCTGGTGCAGCCAGCGAGGA
CAAAACGTCAGAGAAGACGGATAGCAAGGCGGCTGGCTGGTCGCATGATG
CCATGCCCGAGAAACAAATGAAGGTGTGCGAAATCTGTGGCGCTTTCCTG
ATAGTCGGCGATGCACAGCAGCGGATCGAGGACCATTTGATGGGTAAACA
GCATCTGGGCTACTCCAAACTGCGCACGCCGTCGCCGAGATCACGAGCGC
GACAGATGGAGCGCGAGCAGAGAACGACGTCGACGTGAGGGTCGAGTGCA
CGCTTCCACTCCTACGATAGCGACGCAAGCCAGCAGTGAGTACCGCGAGC
GAGTCCGGACTATGTTCGAATCCCCCAGCCCCTCGGATCGAGCTTACACA
TCACCATAAATTCGCACCAGGTCATATCTCGATCGCCAATGCGTGTGCGC
GGTATAGAGAATTGCGCGCTAGAAGAAT
FMO04069.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:36:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3198-RA | 4996 | CG3198-RA | 236..1374 | 37..1169 | 5245 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:36:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6672625..6673570 | 1071..132 | 4420 | 99 | Minus |
| X | 23542271 | X | 6673637..6673738 | 138..37 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:36:04 has no hits.
FMO04069.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:38:38 Download gff for
FMO04069.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3198-RA | 236..1376 | 37..1174 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:49:31 Download gff for
FMO04069.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3198-RA | 232..1372 | 37..1174 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:27:35 Download gff for
FMO04069.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3198-RA | 236..1376 | 37..1174 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:27:35 Download gff for
FMO04069.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6672615..6673563 | 139..1079 | 98 | <- | Minus |
| X | 6673637..6673738 | 37..138 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:38:38 Download gff for
FMO04069.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6566648..6567596 | 139..1079 | 98 | <- | Minus |
| arm_X | 6567670..6567771 | 37..138 | 100 | <- | Minus |
