FMO04072.5prime Sequence
1219 bp (1063 high quality bases) assembled on 2008-07-30
> FMO04072.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGGCACTGCGTGTT
TTTGGCTTAAATATAGTAAAAAATAACAGGAATCTGCTGCAAAATGCATG
CAAATCCAGGGCACCGATGCCATGCTACATGGCAGCGGCTCCATTTGCCA
CCGATGTGACCGTCCAGGCTGCTCCGGCGGCTGTCCAGAAGCAAAGGGTG
AGCAAGGCCATGCGGGCGTACCTGAAAAGAGCCACCGAACACGACGAGTT
CATGAAGACCCAGCACCTGGAGTTCCAGATCGGAAAGCGGCACCTGGCCA
ACATGATGGGCGCCGATGCGGAGACGTTTACCCAGGAGGACATAGACGAG
GCGATATCCTATCTGTTCCCTTCCGGATTGTACGACCAAAAGGCCCGGCC
GGCTATGAAGTCACCCGAGGTTGTCTTCCCCGCCCGCAAGGCTGCGGAAT
TCGATGAGACGGGCAGACCATTCCACAGCATGTTCTACACCGGCAAACCC
AACTTCTTCCAACTGCTTCATGACATTGTAGAAGAAACTAACAAGCTGGC
GGATCTGGAGGAGCGCATGCTACGGCGCGGCAATAAACCCGATGAGAACC
AAAAACTTGAGATTGCCGGCTTTCAGCTGCTGCCCAAGGACCAGTTGGAA
CTTTTGCTAGTTGAGAGCATTGCCGATATCGAATACTCCAACTTTACCAA
CTCCATGGATCGCCTGATCGCATCGCCATATGCTTACAAGAGCAAAGCAT
TCATCGAGCGATACATGAAACCGCTGATGGACCAGTCCAAGCAGCTGGAG
GTGCCCAAACCAAGGATCGATGAAGAGGGTCGCCAGTACATCACCACCTA
CGAGTGCCTGCGCAAAACTGCTAGAGCCGATGTCACAGTGCGGCTACCCG
GAACAGGAAAAATCAGCATTAATGGAAAAGGATATCTCATACTTTGAGGA
CGAAACTGCAGAGACAGCTGCTCTTCCCGCTGCAATTTAGCGAGCTGCTG
GGCAAAGTCGATGTGGAGGCCAACGTCGAGGGAGCGACTTTCCGGTCAGC
TGGAGCCATCCGCTGGCATCGCATGAGTTTGCCAGCTTGTTCGATCAGAA
ATGATGAGTCATGCCTCTGTGTCTGCTGACCGTGACATATCGCGTCGGAA
CTAAGTTCGGCAGGAAGAACATGCCGCAGTACCGATTGCAGAAGGCGCCT
AAGCATTTCTTGATGACAC
FMO04072.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:23:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS9-RA | 1293 | CG2957-RA | 36..1163 | 36..1148 | 5100 | 97.7 | Plus |
CG10092-RB | 2748 | CG10092-RB | 2108..2272 | 1119..965 | 510 | 90.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:23:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7901398..7901744 | 955..608 | 1690 | 99.7 | Minus |
3R | 32079331 | 3R | 7902238..7902455 | 348..131 | 1090 | 100 | Minus |
3R | 32079331 | 3R | 7902006..7902180 | 522..348 | 875 | 100 | Minus |
3R | 32079331 | 3R | 7902536..7902632 | 132..36 | 485 | 100 | Minus |
3R | 32079331 | 3R | 7901810..7901895 | 607..522 | 430 | 100 | Minus |
3R | 32079331 | 3R | 7889570..7889674 | 1066..965 | 380 | 95.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:23:20 has no hits.
FMO04072.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:32:59 Download gff for
FMO04072.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS9-RA | 33..1096 | 29..1088 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:28:35 Download gff for
FMO04072.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS9-RA | 28..1091 | 29..1088 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:01:16 Download gff for
FMO04072.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS9-RA | 33..1096 | 29..1088 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:01:16 Download gff for
FMO04072.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7889570..7889671 | 968..1066 | 96 | <- | Minus |
3R | 7901384..7901744 | 608..967 | 99 | <- | Minus |
3R | 7901810..7901895 | 522..607 | 100 | <- | Minus |
3R | 7902007..7902180 | 348..521 | 100 | <- | Minus |
3R | 7902239..7902454 | 132..347 | 100 | <- | Minus |
3R | 7902537..7902635 | 29..131 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:32:59 Download gff for
FMO04072.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3715292..3715393 | 968..1066 | 96 | <- | Minus |
arm_3R | 3727106..3727466 | 608..967 | 99 | <- | Minus |
arm_3R | 3727532..3727617 | 522..607 | 100 | <- | Minus |
arm_3R | 3727729..3727902 | 348..521 | 100 | <- | Minus |
arm_3R | 3727961..3728176 | 132..347 | 100 | <- | Minus |
arm_3R | 3728259..3728357 | 29..131 | 96 | | Minus |