Clone FMO04072 Report

Search the DGRC for FMO04072

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:40
Well:72
Vector:pMK33-CFH-BD
Associated Gene/TranscriptmRpS9-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO04072.5prime Sequence

1219 bp (1063 high quality bases) assembled on 2008-07-30

> FMO04072.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGGCACTGCGTGTT
TTTGGCTTAAATATAGTAAAAAATAACAGGAATCTGCTGCAAAATGCATG
CAAATCCAGGGCACCGATGCCATGCTACATGGCAGCGGCTCCATTTGCCA
CCGATGTGACCGTCCAGGCTGCTCCGGCGGCTGTCCAGAAGCAAAGGGTG
AGCAAGGCCATGCGGGCGTACCTGAAAAGAGCCACCGAACACGACGAGTT
CATGAAGACCCAGCACCTGGAGTTCCAGATCGGAAAGCGGCACCTGGCCA
ACATGATGGGCGCCGATGCGGAGACGTTTACCCAGGAGGACATAGACGAG
GCGATATCCTATCTGTTCCCTTCCGGATTGTACGACCAAAAGGCCCGGCC
GGCTATGAAGTCACCCGAGGTTGTCTTCCCCGCCCGCAAGGCTGCGGAAT
TCGATGAGACGGGCAGACCATTCCACAGCATGTTCTACACCGGCAAACCC
AACTTCTTCCAACTGCTTCATGACATTGTAGAAGAAACTAACAAGCTGGC
GGATCTGGAGGAGCGCATGCTACGGCGCGGCAATAAACCCGATGAGAACC
AAAAACTTGAGATTGCCGGCTTTCAGCTGCTGCCCAAGGACCAGTTGGAA
CTTTTGCTAGTTGAGAGCATTGCCGATATCGAATACTCCAACTTTACCAA
CTCCATGGATCGCCTGATCGCATCGCCATATGCTTACAAGAGCAAAGCAT
TCATCGAGCGATACATGAAACCGCTGATGGACCAGTCCAAGCAGCTGGAG
GTGCCCAAACCAAGGATCGATGAAGAGGGTCGCCAGTACATCACCACCTA
CGAGTGCCTGCGCAAAACTGCTAGAGCCGATGTCACAGTGCGGCTACCCG
GAACAGGAAAAATCAGCATTAATGGAAAAGGATATCTCATACTTTGAGGA
CGAAACTGCAGAGACAGCTGCTCTTCCCGCTGCAATTTAGCGAGCTGCTG
GGCAAAGTCGATGTGGAGGCCAACGTCGAGGGAGCGACTTTCCGGTCAGC
TGGAGCCATCCGCTGGCATCGCATGAGTTTGCCAGCTTGTTCGATCAGAA
ATGATGAGTCATGCCTCTGTGTCTGCTGACCGTGACATATCGCGTCGGAA
CTAAGTTCGGCAGGAAGAACATGCCGCAGTACCGATTGCAGAAGGCGCCT
AAGCATTTCTTGATGACAC

FMO04072.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:23:21
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS9-RA 1293 CG2957-RA 36..1163 36..1148 5100 97.7 Plus
CG10092-RB 2748 CG10092-RB 2108..2272 1119..965 510 90.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:23:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7901398..7901744 955..608 1690 99.7 Minus
3R 32079331 3R 7902238..7902455 348..131 1090 100 Minus
3R 32079331 3R 7902006..7902180 522..348 875 100 Minus
3R 32079331 3R 7902536..7902632 132..36 485 100 Minus
3R 32079331 3R 7901810..7901895 607..522 430 100 Minus
3R 32079331 3R 7889570..7889674 1066..965 380 95.2 Minus
Blast to na_te.dros performed on 2014-11-28 20:23:20 has no hits.

FMO04072.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:32:59 Download gff for FMO04072.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpS9-RA 33..1096 29..1088 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:28:35 Download gff for FMO04072.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpS9-RA 28..1091 29..1088 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:01:16 Download gff for FMO04072.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpS9-RA 33..1096 29..1088 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:01:16 Download gff for FMO04072.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 7889570..7889671 968..1066 96 <- Minus
3R 7901384..7901744 608..967 99 <- Minus
3R 7901810..7901895 522..607 100 <- Minus
3R 7902007..7902180 348..521 100 <- Minus
3R 7902239..7902454 132..347 100 <- Minus
3R 7902537..7902635 29..131 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:32:59 Download gff for FMO04072.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3715292..3715393 968..1066 96 <- Minus
arm_3R 3727106..3727466 608..967 99 <- Minus
arm_3R 3727532..3727617 522..607 100 <- Minus
arm_3R 3727729..3727902 348..521 100 <- Minus
arm_3R 3727961..3728176 132..347 100 <- Minus
arm_3R 3728259..3728357 29..131 96   Minus