FMO04073.5prime Sequence
377 bp (377 high quality bases) assembled on 2008-08-11
> FMO04073.5prime
TACATTATACGAAGTTATCAGTCGACATGTCGAACTATATTGCCAGAAAG
GGACCCGCAGTTCTCTCAAATCTGGGCAGATGGGCCTACAATCTCTCCGG
ATTCAACCAATACGGTCTGCATCGCGATGATTGTCTGTATGAGAACGAGG
ATGTGAAGGAGGCCGTGCGCCGATTGCCCAGGAAGCTGTACGATGAGCGT
AACTACCGCATCATGAGGGCCCTCCATCTGTCCATGACCAAGACCATTCT
GCCCAAGGAGCAGTGGACCAAGTACGAGGAGGACGTCAAGTATCTGGAAC
CCTACCTCAAGGAGGTCGTGAAGGAGCGCGAGGAGCGTGAGGACTGGGAA
AAGATCCACGCAAGCTTTCTAGACCAT
FMO04073.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:39:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3560-RA | 523 | CG3560-RA | 122..455 | 26..359 | 1670 | 100 | Plus |
| CG32576-RA | 1709 | CG32576-RA | 742..987 | 359..114 | 1230 | 100 | Minus |
| CG17856-RA | 503 | CG17856-RA | 86..407 | 26..347 | 650 | 80.1 | Plus |
| CG32576-RA | 1709 | CG32576-RA | 1048..1097 | 116..67 | 250 | 100 | Minus |
| CG32576-RA | 1709 | CG32576-RA | 1213..1253 | 66..26 | 205 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:39:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16286675..16286920 | 114..359 | 1230 | 100 | Plus |
| 3R | 32079331 | 3R | 28294133..28294454 | 26..347 | 650 | 80.1 | Plus |
| X | 23542271 | X | 16286565..16286614 | 67..116 | 250 | 100 | Plus |
| X | 23542271 | X | 16286409..16286449 | 26..66 | 205 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:39:19 has no hits.
FMO04073.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:43 Download gff for
FMO04073.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3560-RA | 122..458 | 26..363 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:16:44 Download gff for
FMO04073.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3560-RA | 68..404 | 26..363 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:21:28 Download gff for
FMO04073.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3560-RA | 122..458 | 26..363 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:21:28 Download gff for
FMO04073.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16286403..16286449 | 21..66 | 93 | -> | Plus |
| X | 16286565..16286612 | 67..114 | 100 | -> | Plus |
| X | 16286676..16286923 | 115..363 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:43 Download gff for
FMO04073.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16180436..16180482 | 21..66 | 93 | -> | Plus |
| arm_X | 16180598..16180645 | 67..114 | 100 | -> | Plus |
| arm_X | 16180709..16180956 | 115..363 | 99 | | Plus |
