FMO04076.5prime Sequence
674 bp (674 high quality bases) assembled on 2008-08-11
> FMO04076.5prime
GCATACCTTATACGAAGTTATCAGTCGACATGGTTGACTTCTACTACCTG
CCCGGCTCCTCCCCCTGCCGCTCCGTGATCATGACCGCCAAGGCCGTGGG
CGTCGAGCTGAACAAGAAGCTGCTCAACCTGCAGGCCGGTGAGCACCTGA
AGCCGGAGTTCCTGAAGATCAATCCCCAGCACACCATTCCCACGCTGGTG
GACAACGGATTCGCGCTGTGGGAGTCCCGCGCCATCCAGGTGTATTTGGT
GGAGAAGTACGGCAAGACCGACTCCCTGTACCCTAAGTGCCCCAAGAAGC
GCGCCGTGATCAATCAGCGCCTGTACTTCGACATGGGAACGCTGTACCAG
AGCTTCACCAACTACTACTACCCACAGGTGTTCGCCAAGGCGCCCGCCGA
TCCAGAGGCCTTCAAGAAGATCGAGGCCGCCTTCGAGTTCCTGAACACCT
TCCTGGAGGGACAGGACTACGCCGCCGGTGACTCCCTTACCGTAGCCGAC
ATTGCCCTGGTGGCAACCGTGTCCACATTCGAGGTGGCCAAATTCAAGAT
CAGCAAGTACGCCAATGTGAACAGGTGGTACGAGAACGCCAAGAAGGTGA
CTCCCGGATGGGAGGAGAACTGGGCCGGATGCCTGGAGTTCAAGAAATAC
TTCGAAGCAAGCTTTCTAGACCAT
FMO04076.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:32:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GstD1-RB | 843 | CG10045-RB | 89..715 | 30..656 | 3090 | 99.5 | Plus |
| GstD1-RA | 825 | CG10045-RA | 71..697 | 30..656 | 3090 | 99.5 | Plus |
| GstD2-RA | 734 | CG4181-RA | 61..619 | 66..624 | 830 | 77.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:32:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12367945..12368571 | 656..30 | 3090 | 99.5 | Minus |
| 3R | 32079331 | 3R | 12372031..12372589 | 66..624 | 785 | 76 | Plus |
| 3R | 32079331 | 3R | 12375800..12376354 | 69..623 | 750 | 75.7 | Plus |
| 3R | 32079331 | 3R | 12364920..12365423 | 655..152 | 645 | 75.2 | Minus |
| 3R | 32079331 | 3R | 12380039..12380631 | 36..628 | 640 | 73.9 | Plus |
| 3R | 32079331 | 3R | 12374264..12374464 | 144..344 | 480 | 82.6 | Plus |
| 3R | 32079331 | 3R | 12366543..12366898 | 384..29 | 415 | 74.4 | Minus |
| 3R | 32079331 | 3R | 12378609..12378872 | 87..347 | 370 | 76.9 | Plus |
| 3R | 32079331 | 3R | 12373190..12373385 | 141..336 | 290 | 76.5 | Plus |
| 3R | 32079331 | 3R | 12377304..12377486 | 165..347 | 225 | 74.9 | Plus |
| 3R | 32079331 | 3R | 12373454..12373678 | 405..629 | 210 | 72.9 | Plus |
| 3R | 32079331 | 3R | 12374534..12374743 | 414..623 | 210 | 73.3 | Plus |
| 2R | 25286936 | 2R | 18400874..18400931 | 141..198 | 185 | 87.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:32:04 has no hits.
FMO04076.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:59 Download gff for
FMO04076.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstD1-RA | 68..705 | 30..668 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:15:43 Download gff for
FMO04076.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstD1-RB | 116..762 | 19..668 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:42 Download gff for
FMO04076.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstD1-RA | 71..708 | 30..668 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:42 Download gff for
FMO04076.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12367934..12368580 | 19..668 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:59 Download gff for
FMO04076.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8193656..8194302 | 19..668 | 98 | | Minus |
