FMO04077.5prime Sequence
573 bp (573 high quality bases) assembled on 2008-08-11
> FMO04077.5prime
AGCATACATTATACGAAGTTATCAGTCGACATGTCAGAACCAGAGCCAGA
TGTCAAGCCCAACATACTAATAACCGGAACTCCTGGAGCGGGGAAATCGT
ATTTATGCGAACGTATAGCCTCCGAACTAAAGTTTGAGTGGCTGGACTGC
TCCAAAATCGCCAAGGAGAAAAATTTTGTAGAGGAATATGACGAGGAGTA
CGATTGTCCCATTCTGGATGAAGAAAAGCTGATGGATCACTTGGAGCCCC
TGATGGCAAAGGGGGGCAACGTCGTCGAGTATCATGGCTGTGATTTCTTT
CCAGAGCGCTGGTTTCAAGCCGTCTTCGTGGTAACCTGTCCCAATACAAC
ACTCTACGATCGTCTGAAGGAGCGCAACTACAACGAAAAGAAACTGGCAT
CCAATATTCAGTGCGAGATCTTTGGAACCATTTTGGAAGAGGCCCGCGAT
TCCTACAAATCAGATATAGTATTCGAACTTAAGGGCGAAACAAAGGCAGA
TGCCCATATAAGCATAAAAACAGTCAAAAACTGGTATCGTATGTGGAAAA
GAAAAGCAAGCTTTCTAGACCAT
FMO04077.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:40:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ak6-RA | 711 | CG8816-RA | 122..646 | 31..555 | 2625 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:40:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12569079..12569407 | 555..227 | 1645 | 100 | Minus |
| 2R | 25286936 | 2R | 12569461..12569613 | 228..76 | 765 | 100 | Minus |
| 2R | 25286936 | 2R | 12569680..12569726 | 77..31 | 235 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:40:54 has no hits.
FMO04077.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:17 Download gff for
FMO04077.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ak6-RA | 118..649 | 24..559 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:18:09 Download gff for
FMO04077.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8816-RA | 138..669 | 24..559 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:22:23 Download gff for
FMO04077.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ak6-RA | 118..649 | 24..559 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:22:23 Download gff for
FMO04077.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12569075..12569405 | 229..559 | 99 | <- | Minus |
| 2R | 12569461..12569612 | 77..228 | 100 | <- | Minus |
| 2R | 12569681..12569730 | 24..76 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:17 Download gff for
FMO04077.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8456580..8456910 | 229..559 | 99 | <- | Minus |
| arm_2R | 8456966..8457117 | 77..228 | 100 | <- | Minus |
| arm_2R | 8457186..8457235 | 24..76 | 92 | | Minus |
