FMO04078.5prime Sequence
1222 bp (1024 high quality bases) assembled on 2008-08-11
> FMO04078.5prime
GCATACCTTATACGAAGTTATCAGTCGACATGGTGGAGACGGCAACGACA
ACGACCATAACCCGCACCACCACCGCCGTTCCGGCTGGTGCAGTAACGGT
AACAGGACCCACTGCCTCGGCCACGCCCACCGCGACACAGGCGGCCGCGC
AGGCGCATCGCAACGATGAGACCACCCGGGCCATCTTCAATCTGAAAGTC
ATCGTCTTTCTGCTCCTCCTGCCTCTGGTCCTGCTGGCCGTCTTTCTCAA
GCACCTGTTGGATTACCTATTCGCGCTGGGACTCAAGGAGAAGGATGTCA
GTGGCAAGGTGGCACTGGTGACCGGCGGAGGCAGTGGGCTGGGTCGCGAG
ATCTGCTTGGAACTGGCGCGGCGGGGCTGCAAGCTGGCCGTCGTTGATGT
CAACTCCAAGGGATGTTACGAAACGGTGGAGCTGCTCTCCAAGATTCCAC
GCTGCGTTGCCAAGGCCTACAAGAACGACGTGTCATCGCCTCGCGAGCTT
CAACTGATGGCCGCCAAGGTGGAGAAGGAACTGGGTCCCGTGGACATTCT
GGTCAACAATGCCTCCCTCATGCCCATGACTTCAACACCCAGTCTGAAGA
GCGATGAAATCGACACAATACTGCAGCTCAATCTGGGCTCCTACATAATG
ACCACCAAGGAGTTCCTGCCGAAGATGATAAACCGCAAGTCCGGTCATCT
GGTGGCAGTAAATGCCTTAGCGGGTCTAGTTCCACTGCCAGGAGCGGGCA
TCTACACGGCCACCAAATACGGAATCGAGGGCTTCATGGAATCGCTGCGA
GCTGAGCTGCGATTGTCCGACTGTGACTACGTTCGCACCACGGTGGCCAA
TGCCTATCTGATGAGGACCAGCGGAGATCTTCCACTGCTCAGTGATGCGG
GCATTGCCAAGAGCTATCCCGGACTGCCCACACCATATGTGGCCGAGAAG
ATTGTCAAGGGCGTGTGCTGAACGAGCGCATGGTGTATGTGCCAAAAATA
TTCCCAACTCAGTGAATGGCTGCTCAGCTGTGCCACCAGTGCAGATACAT
GCTGCCTCCCTTCTACCATCGATGTGGCCCAGCTCCCACCCTTGTTACTG
AAGGCAGCTTTCTAACATCCGTTTGGGCCGCCAAGTAATGGCATAACCAA
TCTAACCTAATCTATCCACTAGCTAGGATATCTGTCCTAGTGACCTAGGG
CTGTTGAATTCTCCCCCAGTAT
FMO04078.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:37:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17121-RA | 1433 | CG17121-RA | 195..1273 | 30..1100 | 4995 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:37:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23047729..23048020 | 321..30 | 1460 | 100 | Minus |
| 3R | 32079331 | 3R | 23045157..23045335 | 901..723 | 895 | 100 | Minus |
| 3R | 32079331 | 3R | 23045527..23045705 | 650..472 | 895 | 100 | Minus |
| 3R | 32079331 | 3R | 23045762..23045918 | 473..317 | 785 | 100 | Minus |
| 3R | 32079331 | 3R | 23044973..23045099 | 1027..901 | 510 | 96.9 | Minus |
| 3R | 32079331 | 3R | 23045399..23045474 | 725..650 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:37:30 has no hits.
FMO04078.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:18 Download gff for
FMO04078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17121-RA | 191..1214 | 23..1044 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:18:19 Download gff for
FMO04078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17121-RA | 165..1188 | 23..1044 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:29 Download gff for
FMO04078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17121-RA | 191..1214 | 23..1044 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:29 Download gff for
FMO04078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23044970..23045098 | 902..1030 | 96 | <- | Minus |
| 3R | 23045157..23045334 | 724..901 | 100 | <- | Minus |
| 3R | 23045401..23045473 | 651..723 | 100 | <- | Minus |
| 3R | 23045527..23045703 | 474..650 | 100 | <- | Minus |
| 3R | 23045762..23045917 | 318..473 | 100 | <- | Minus |
| 3R | 23047733..23048024 | 23..317 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:18 Download gff for
FMO04078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18870879..18871056 | 724..901 | 100 | <- | Minus |
| arm_3R | 18871123..18871195 | 651..723 | 100 | <- | Minus |
| arm_3R | 18871249..18871425 | 474..650 | 100 | <- | Minus |
| arm_3R | 18871484..18871639 | 318..473 | 100 | <- | Minus |
| arm_3R | 18870692..18870820 | 902..1030 | 96 | <- | Minus |
| arm_3R | 18873455..18873746 | 23..317 | 98 | | Minus |
